Analysis of interatomic Contacts of Structural Units in PDB entry:
9I8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I8M entry

There are 27 chains in PDB entry 9I8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 209	LEU 498
B	GLU 246	ASN 549
C	LEU 209	SER 495
D	GLU 246	LYS 542
E	LEU 209	LEU 498
F	GLU 246	GLN 530
G	LEU 209	SER 495
H	GLU 246	ASN 551
I	MET 1	GLU 347
J	ASP 207	THR 704
K	MET 1	GLU 347
L	SER 3	VAL 1378
O	PRO 9	SER 101
Q	PRO 9	LEU 117
R	GLN 6	ASP 103
S	PRO 9	LEU 117
T	PRO 9	SER 101
U	ALA 597	PHE 671
V	ALA 597	PHE 671
W	ALA 597	PHE 671
X	ALA 597	PHE 671
o	MET 8	ARG 59
p	GLU 13	GLU 68
q	ALA 10	LYS 65
r	ASN 7	LYS 65
s	MET 8	ALA 66
t	MET 8	LYS 65

There are212 helices in PDB entry 9I8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	211	226	Right-handed alpha
Helix 2	AA2	A	252	280	Right-handed alpha
Helix 3	AA3	A	281	283	Right-handed 310
Helix 4	AA4	A	286	303	Right-handed alpha
Helix 5	AA5	A	303	312	Right-handed alpha
Helix 6	AA6	A	319	325	Right-handed alpha
Helix 7	AA7	A	327	335	Right-handed alpha
Helix 8	AA8	A	337	347	Right-handed alpha
Helix 9	AA9	A	350	362	Right-handed alpha
Helix 10	AB1	A	368	395	Right-handed alpha
Helix 11	AB2	A	443	462	Right-handed alpha
Helix 12	AB3	A	482	490	Right-handed alpha
Helix 13	AB4	A	491	497	Right-handed alpha
Helix 14	AB5	B	247	259	Right-handed alpha
Helix 15	AB6	B	285	311	Right-handed alpha
Helix 16	AB7	B	321	330	Right-handed alpha
Helix 17	AB8	B	331	346	Right-handed alpha
Helix 18	AB9	B	363	370	Right-handed alpha
Helix 19	AC1	B	370	386	Right-handed alpha
Helix 20	AC2	B	391	396	Right-handed alpha
Helix 21	AC3	B	397	402	Right-handed alpha
Helix 22	AC4	B	407	414	Right-handed alpha
Helix 23	AC5	B	414	422	Right-handed alpha
Helix 24	AC6	B	428	435	Right-handed alpha
Helix 25	AC7	B	475	480	Right-handed alpha
Helix 26	AC8	B	481	491	Right-handed alpha
Helix 27	AC9	B	492	494	Right-handed 310
Helix 28	AD1	B	504	520	Right-handed alpha
Helix 29	AD2	B	533	547	Right-handed alpha
Helix 30	AD3	C	210	226	Right-handed alpha
Helix 31	AD4	C	254	260	Right-handed alpha
Helix 32	AD5	C	261	280	Right-handed alpha
Helix 33	AD6	C	287	314	Right-handed alpha
Helix 34	AD7	C	323	348	Right-handed alpha
Helix 35	AD8	C	351	365	Right-handed alpha
Helix 36	AD9	C	368	382	Right-handed alpha
Helix 37	AE1	C	382	395	Right-handed alpha
Helix 38	AE2	C	442	451	Right-handed alpha
Helix 39	AE3	C	484	495	Right-handed alpha
Helix 40	AE4	D	247	259	Right-handed alpha
Helix 41	AE5	D	285	290	Right-handed alpha
Helix 42	AE6	D	296	309	Right-handed alpha
Helix 43	AE7	D	321	335	Right-handed alpha
Helix 44	AE8	D	335	346	Right-handed alpha
Helix 45	AE9	D	370	375	Right-handed alpha
Helix 46	AF1	D	379	385	Right-handed alpha
Helix 47	AF2	D	395	400	Right-handed alpha
Helix 48	AF3	D	410	435	Right-handed alpha
Helix 49	AF4	D	475	489	Right-handed alpha
Helix 50	AF5	D	528	533	Right-handed alpha
Helix 51	AF6	D	533	538	Right-handed alpha
Helix 52	AF7	E	214	226	Right-handed alpha
Helix 53	AF8	E	252	261	Right-handed alpha
Helix 54	AF9	E	262	282	Right-handed alpha
Helix 55	AG1	E	286	312	Right-handed alpha
Helix 56	AG2	E	328	348	Right-handed alpha
Helix 57	AG3	E	351	365	Right-handed alpha
Helix 58	AG4	E	368	396	Right-handed alpha
Helix 59	AG5	E	445	457	Right-handed alpha
Helix 60	AG6	E	487	498	Right-handed alpha
Helix 61	AG7	F	247	253	Right-handed alpha
Helix 62	AG8	F	253	259	Right-handed alpha
Helix 63	AG9	F	290	309	Right-handed alpha
Helix 64	AH1	F	322	344	Right-handed alpha
Helix 65	AH2	F	365	370	Right-handed alpha
Helix 66	AH3	F	370	386	Right-handed alpha
Helix 67	AH4	F	395	400	Right-handed alpha
Helix 68	AH5	F	410	422	Right-handed alpha
Helix 69	AH6	F	422	435	Right-handed alpha
Helix 70	AH7	F	477	490	Right-handed alpha
Helix 71	AH8	G	210	226	Right-handed alpha
Helix 72	AH9	G	252	260	Right-handed alpha
Helix 73	AI1	G	262	274	Right-handed alpha
Helix 74	AI2	G	274	283	Right-handed alpha
Helix 75	AI3	G	286	301	Right-handed alpha
Helix 76	AI4	G	301	313	Right-handed alpha
Helix 77	AI5	G	319	328	Right-handed alpha
Helix 78	AI6	G	330	345	Right-handed alpha
Helix 79	AI7	G	350	365	Right-handed alpha
Helix 80	AI8	G	369	382	Right-handed alpha
Helix 81	AI9	G	382	395	Right-handed alpha
Helix 82	AJ1	G	442	458	Right-handed alpha
Helix 83	AJ2	G	484	489	Right-handed alpha
Helix 84	AJ3	G	490	494	Right-handed 310
Helix 85	AJ4	H	247	258	Right-handed alpha
Helix 86	AJ5	H	288	293	Right-handed alpha
Helix 87	AJ6	H	293	307	Right-handed alpha
Helix 88	AJ7	H	321	342	Right-handed alpha
Helix 89	AJ8	H	343	347	Right-handed 310
Helix 90	AJ9	H	370	384	Right-handed alpha
Helix 91	AK1	H	397	402	Right-handed alpha
Helix 92	AK2	H	407	422	Right-handed alpha
Helix 93	AK3	H	422	435	Right-handed alpha
Helix 94	AK4	H	475	489	Right-handed alpha
Helix 95	AK5	H	528	533	Right-handed alpha
Helix 96	AK6	H	533	545	Right-handed alpha
Helix 97	AK7	H	546	551	Right-handed alpha
Helix 98	AK8	I	2	9	Right-handed alpha
Helix 99	AK9	I	35	41	Right-handed alpha
Helix 100	AL1	I	41	51	Right-handed alpha
Helix 101	AL2	I	52	62	Right-handed alpha
Helix 102	AL3	I	85	94	Right-handed alpha
Helix 103	AL4	I	97	114	Right-handed alpha
Helix 104	AL5	I	118	126	Right-handed alpha
Helix 105	AL6	I	133	147	Right-handed alpha
Helix 106	AL7	I	149	151	Right-handed 310
Helix 107	AL8	I	152	161	Right-handed alpha
Helix 108	AL9	I	165	190	Right-handed alpha
Helix 109	AM1	I	269	283	Right-handed alpha
Helix 110	AM2	I	284	290	Right-handed alpha
Helix 111	AM3	I	302	314	Right-handed alpha
Helix 112	AM4	I	322	333	Right-handed alpha
Helix 113	AM5	I	335	339	Right-handed 310
Helix 114	AM6	I	340	345	Right-handed alpha
Helix 115	AM7	J	208	216	Right-handed alpha
Helix 116	AM8	J	237	250	Right-handed alpha
Helix 117	AM9	J	267	274	Right-handed alpha
Helix 118	AN1	J	302	317	Right-handed alpha
Helix 119	AN2	J	317	326	Right-handed alpha
Helix 120	AN3	J	355	384	Right-handed alpha
Helix 121	AN4	J	398	416	Right-handed alpha
Helix 122	AN5	J	426	445	Right-handed alpha
Helix 123	AN6	J	451	463	Right-handed alpha
Helix 124	AN7	J	465	478	Right-handed alpha
Helix 125	AN8	J	549	566	Right-handed alpha
Helix 126	AN9	J	588	601	Right-handed alpha
Helix 127	AO1	J	678	698	Right-handed alpha
Helix 128	AO2	K	37	61	Right-handed alpha
Helix 129	AO3	K	85	94	Right-handed alpha
Helix 130	AO4	K	96	109	Right-handed alpha
Helix 131	AO5	K	109	114	Right-handed alpha
Helix 132	AO6	K	119	127	Right-handed alpha
Helix 133	AO7	K	132	146	Right-handed alpha
Helix 134	AO8	K	149	151	Right-handed 310
Helix 135	AO9	K	152	159	Right-handed alpha
Helix 136	AP1	K	165	193	Right-handed alpha
Helix 137	AP2	K	269	290	Right-handed alpha
Helix 138	AP3	K	302	316	Right-handed alpha
Helix 139	AP4	K	322	335	Right-handed alpha
Helix 140	AP5	K	336	345	Right-handed alpha
Helix 141	AP6	L	4	15	Right-handed alpha
Helix 142	AP7	L	32	53	Right-handed alpha
Helix 143	AP8	L	67	82	Right-handed alpha
Helix 144	AP9	L	84	101	Right-handed alpha
Helix 145	AQ1	L	108	119	Right-handed alpha
Helix 146	AQ2	L	156	184	Right-handed alpha
Helix 147	AQ3	L	207	215	Right-handed alpha
Helix 148	AQ4	L	313	318	Right-handed alpha
Helix 149	AQ5	L	319	338	Right-handed alpha
Helix 150	AQ6	L	349	360	Right-handed alpha
Helix 151	AQ7	L	361	363	Right-handed 310
Helix 152	AQ8	L	393	415	Right-handed alpha
Helix 153	AQ9	L	427	449	Right-handed alpha
Helix 154	AR1	L	457	462	Right-handed alpha
Helix 155	AR2	L	463	476	Right-handed alpha
Helix 156	AR3	L	497	510	Right-handed alpha
Helix 157	AR4	L	517	529	Right-handed alpha
Helix 158	AR5	L	529	538	Right-handed alpha
Helix 159	AR6	L	590	602	Right-handed alpha
Helix 160	AR7	L	1361	1378	Right-handed alpha
Helix 161	AR8	O	10	22	Right-handed alpha
Helix 162	AR9	O	28	41	Right-handed alpha
Helix 163	AS1	O	50	65	Right-handed alpha
Helix 164	AS2	O	67	84	Right-handed alpha
Helix 165	AS3	O	89	100	Right-handed alpha
Helix 166	AS4	Q	10	22	Right-handed alpha
Helix 167	AS5	Q	28	41	Right-handed alpha
Helix 168	AS6	Q	50	65	Right-handed alpha
Helix 169	AS7	Q	67	85	Right-handed alpha
Helix 170	AS8	Q	89	101	Right-handed alpha
Helix 171	AS9	Q	113	117	Right-handed 310
Helix 172	AT1	R	8	22	Right-handed alpha
Helix 173	AT2	R	28	40	Right-handed alpha
Helix 174	AT3	R	50	65	Right-handed alpha
Helix 175	AT4	R	67	85	Right-handed alpha
Helix 176	AT5	R	89	100	Right-handed alpha
Helix 177	AT6	S	10	22	Right-handed alpha
Helix 178	AT7	S	28	40	Right-handed alpha
Helix 179	AT8	S	50	65	Right-handed alpha
Helix 180	AT9	S	67	85	Right-handed alpha
Helix 181	AU1	S	89	100	Right-handed alpha
Helix 182	AU2	T	10	22	Right-handed alpha
Helix 183	AU3	T	28	40	Right-handed alpha
Helix 184	AU4	T	50	66	Right-handed alpha
Helix 185	AU5	T	67	85	Right-handed alpha
Helix 186	AU6	T	89	100	Right-handed alpha
Helix 187	AU7	U	598	649	Right-handed alpha
Helix 188	AU8	U	650	669	Right-handed alpha
Helix 189	AU9	V	598	648	Right-handed alpha
Helix 190	AV1	V	650	668	Right-handed alpha
Helix 191	AV2	W	598	649	Right-handed alpha
Helix 192	AV3	W	650	670	Right-handed alpha
Helix 193	AV4	X	598	649	Right-handed alpha
Helix 194	AV5	X	650	671	Right-handed alpha
Helix 195	AV6	o	9	25	Right-handed alpha
Helix 196	AV7	o	30	43	Right-handed alpha
Helix 197	AV8	o	46	59	Right-handed alpha
Helix 198	AV9	p	14	25	Right-handed alpha
Helix 199	AW1	p	30	42	Right-handed alpha
Helix 200	AW2	p	46	67	Right-handed alpha
Helix 201	AW3	q	11	26	Right-handed alpha
Helix 202	AW4	q	30	43	Right-handed alpha
Helix 203	AW5	q	46	65	Right-handed alpha
Helix 204	AW6	r	8	26	Right-handed alpha
Helix 205	AW7	r	30	43	Right-handed alpha
Helix 206	AW8	r	46	65	Right-handed alpha
Helix 207	AW9	s	9	26	Right-handed alpha
Helix 208	AX1	s	30	43	Right-handed alpha
Helix 209	AX2	s	46	66	Right-handed alpha
Helix 210	AX3	t	9	26	Right-handed alpha
Helix 211	AX4	t	30	44	Right-handed alpha
Helix 212	AX5	t	46	65	Right-handed alpha

There are 12 sheets in PDB entry 9I8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	246	247	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	463	464	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	236	first strand
Strand 2	C	243	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	235	first strand
Strand 2	E	244	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	236	first strand
Strand 2	G	243	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	408	410	first strand
Strand 2	G	431	433	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	205	206	first strand
Strand 2	I	258	259	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	259	260	first strand
Strand 2	J	296	297	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	284	286	first strand
Strand 2	J	289	290	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	493	494	first strand
Strand 2	J	502	503	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	20	first strand
Strand 2	K	24	27	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	370	372	first strand
Strand 2	L	377	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I8M