Analysis of interatomic Contacts of Structural Units in PDB entry:
9I8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I8V entry

There are 5 chains in PDB entry 9I8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 706PRO 733
C
 ARG 3GLY 505
D
 MET 1ASN 266
E
 MET 1ILE 228
F
 VAL 18LYS 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9I8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
710 731Right-handed alpha
Helix 2
AA2
C
4 10Right-handed alpha
Helix 3
AA3
C
39 55Right-handed alpha
Helix 4
AA4
C
64 73Right-handed alpha
Helix 5
AA5
C
112 117Right-handed alpha
Helix 6
AA6
C
133 137Right-handed alpha
Helix 7
AA7
C
139 151Right-handed alpha
Helix 8
AA8
C
164 174Right-handed alpha
Helix 9
AA9
C
175 182Right-handed alpha
Helix 10
AB1
C
186 192Right-handed alpha
Helix 11
AB2
C
193 198Right-handed 310
Helix 12
AB3
C
203 207Right-handed 310
Helix 13
AB4
C
208 216Right-handed alpha
Helix 14
AB5
C
239 247Right-handed alpha
Helix 15
AB6
C
262 285Right-handed alpha
Helix 16
AB7
C
300 337Right-handed alpha
Helix 17
AB8
C
339 344Right-handed alpha
Helix 18
AB9
C
390 394Right-handed 310
Helix 19
AC1
C
415 422Right-handed alpha
Helix 20
AC2
C
477 488Right-handed alpha
Helix 21
AC3
D
2 13Right-handed alpha
Helix 22
AC4
D
16 19Right-handed 310
Helix 23
AC5
D
20 31Right-handed alpha
Helix 24
AC6
D
34 52Right-handed alpha
Helix 25
AC7
D
64 75Right-handed alpha
Helix 26
AC8
D
81 89Right-handed alpha
Helix 27
AC9
D
93 129Right-handed alpha
Helix 28
AD1
D
131 143Right-handed alpha
Helix 29
AD2
D
152 169Right-handed alpha
Helix 30
AD3
D
186 223Right-handed alpha
Helix 31
AD4
D
224 225Right-handed 310
Helix 32
AD5
D
226 230Right-handed 310
Helix 33
AD6
D
231 244Right-handed alpha
Helix 34
AD7
D
253 260Right-handed alpha
Helix 35
AD8
E
2 9Right-handed alpha
Helix 36
AD9
E
22 36Right-handed alpha
Helix 37
AE1
E
45 50Right-handed alpha
Helix 38
AE2
E
55 67Right-handed alpha
Helix 39
AE3
E
75 93Right-handed alpha
Helix 40
AE4
E
95 101Right-handed alpha
Helix 41
AE5
E
125 139Right-handed alpha
Helix 42
AE6
E
148 162Right-handed alpha
Helix 43
AE7
E
163 171Right-handed alpha
Helix 44
AE8
E
180 184Right-handed 310
Helix 45
AE9
E
194 228Right-handed alpha
Helix 46
AF1
F
19 25Right-handed alpha
Helix 47
AF2
F
31 42Right-handed alpha
Helix 48
AF3
F
51 63Right-handed alpha
Helix 49
AF4
F
74 82Right-handed alpha
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There are 6 sheets in PDB entry 9I8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
19 22anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
82 89parallel
Strand 3
C
96 103anti-parallel
Strand 4
C
370 374anti-parallel
Strand 5
C
357 359anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
296 297anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 352first strand
Strand 2
C
123 132anti-parallel
Strand 3
C
253 260anti-parallel
Strand 4
C
231 237anti-parallel
Strand 5
C
492 501anti-parallel
Strand 6
C
409 413anti-parallel
Strand 7
C
398 401anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
366 367anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 379first strand
Strand 2
C
425 427anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il