Analysis of interatomic Contacts of Structural Units in PDB entry:
9I98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I98 entry

There are 3 chains in PDB entry 9I98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 226LEU 784
B
 CYS 999ILE 1147
C
 ALA 1ALA 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9I98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 302Right-handed alpha
Helix 2
AA2
A
463 470Right-handed alpha
Helix 3
AA3
A
536 541Right-handed alpha
Helix 4
AA4
A
660 668Right-handed alpha
Helix 5
AA5
A
669 673Right-handed 310
Helix 6
AA6
A
768 774Right-handed alpha
Helix 7
AA7
B
1025 1038Right-handed alpha
Helix 8
AA8
B
1109 1111Right-handed 310
Helix 9
AA9
B
1112 1138Right-handed alpha
Helix 10
AB1
B
1138 1147Right-handed alpha
Helix 11
AB2
C
4 9Right-handed 310
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There are 3 sheets in PDB entry 9I98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
255 264anti-parallel
Strand 4
A
240 244anti-parallel
Strand 5
A
233 236anti-parallel
Strand 6
A
745 757anti-parallel
Strand 7
A
727 740anti-parallel
Strand 8
A
711 722anti-parallel
Strand 9
A
697 706anti-parallel
Strand 10
A
682 693anti-parallel
Strand 11
A
650 659anti-parallel
Strand 12
A
634 647anti-parallel
Strand 13
A
620 629anti-parallel
Strand 14
A
604 614anti-parallel
Strand 15
A
573 584anti-parallel
Strand 16
A
555 567anti-parallel
Strand 17
A
504 517anti-parallel
Strand 18
A
493 497anti-parallel
Strand 19
B
1002 1003anti-parallel
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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
255 264anti-parallel
Strand 4
A
269 280anti-parallel
Strand 5
A
283 292anti-parallel
Strand 6
A
310 321anti-parallel
Strand 7
A
325 334anti-parallel
Strand 8
A
354 365anti-parallel
Strand 9
A
368 379anti-parallel
Strand 10
A
388 403anti-parallel
Strand 11
A
406 419anti-parallel
Strand 12
A
426 440anti-parallel
Strand 13
A
445 461anti-parallel
Strand 14
A
477 491anti-parallel
Strand 15
A
504 517anti-parallel
Strand 16
A
493 497anti-parallel
Strand 17
B
1002 1003anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1041 1043first strand
Strand 2
B
1015 1020parallel
Strand 3
B
1054 1069parallel
Strand 4
B
1075 1090anti-parallel
Strand 5
B
1094 1107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il