Analysis of interatomic Contacts of Structural Units in PDB entry:
9IBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IBN entry

There are 2 chains in PDB entry 9IBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29SER 303
B
 LYS 30THR 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9IBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 50Right-handed alpha
Helix 2
AA2
A
52 73Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 91Right-handed alpha
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
107 127Right-handed alpha
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
155 169Right-handed alpha
Helix 9
AA9
A
171 180Right-handed alpha
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
202 212Right-handed alpha
Helix 12
AB3
A
247 250Right-handed 310
Helix 13
AB4
A
251 264Right-handed alpha
Helix 14
AB5
A
266 281Right-handed alpha
Helix 15
AB6
A
287 291Right-handed 310
Helix 16
AB7
B
42 50Right-handed alpha
Helix 17
AB8
B
52 73Right-handed alpha
Helix 18
AB9
B
74 76Right-handed 310
Helix 19
AC1
B
77 91Right-handed alpha
Helix 20
AC2
B
95 103Right-handed alpha
Helix 21
AC3
B
107 126Right-handed alpha
Helix 22
AC4
B
131 141Right-handed alpha
Helix 23
AC5
B
155 169Right-handed alpha
Helix 24
AC6
B
171 180Right-handed alpha
Helix 25
AC7
B
182 187Right-handed alpha
Helix 26
AC8
B
202 212Right-handed alpha
Helix 27
AC9
B
247 250Right-handed 310
Helix 28
AD1
B
251 264Right-handed alpha
Helix 29
AD2
B
266 282Right-handed alpha
Helix 30
AD3
B
287 291Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9IBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
31 34anti-parallel
Strand 3
B
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
221 222anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
B
31 34anti-parallel
Strand 3
B
39 41anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
233 240anti-parallel
Strand 4
B
221 222anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il