Analysis of interatomic Contacts of Structural Units in PDB entry:
9IBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IBX entry

There are 5 chains in PDB entry 9IBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 51LYS 1211
B
 GLU 67ALA 482
C
 GLU 67ALA 482
P
 G 8 T 25
T
 C 14 C 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9IBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 71Right-handed alpha
Helix 2
AA2
A
79 93Right-handed alpha
Helix 3
AA3
A
117 142Right-handed alpha
Helix 4
AA4
A
163 165Right-handed 310
Helix 5
AA5
A
208 213Right-handed alpha
Helix 6
AA6
A
223 227Right-handed 310
Helix 7
AA7
A
254 259Right-handed alpha
Helix 8
AA8
A
260 265Right-handed 310
Helix 9
AA9
A
277 286Right-handed alpha
Helix 10
AB1
A
288 299Right-handed alpha
Helix 11
AB2
A
327 332Right-handed 310
Helix 12
AB3
A
337 346Right-handed alpha
Helix 13
AB4
A
363 370Right-handed alpha
Helix 14
AB5
A
370 400Right-handed alpha
Helix 15
AB6
A
402 410Right-handed alpha
Helix 16
AB7
A
411 414Right-handed 310
Helix 17
AB8
A
421 454Right-handed alpha
Helix 18
AB9
A
455 457Right-handed 310
Helix 19
AC1
A
459 464Right-handed 310
Helix 20
AC2
A
515 533Right-handed alpha
Helix 21
AC3
A
534 540Right-handed 310
Helix 22
AC4
A
551 556Right-handed alpha
Helix 23
AC5
A
579 584Right-handed alpha
Helix 24
AC6
A
629 644Right-handed alpha
Helix 25
AC7
A
748 755Right-handed alpha
Helix 26
AC8
A
764 788Right-handed alpha
Helix 27
AC9
A
800 805Right-handed alpha
Helix 28
AD1
A
852 856Right-handed 310
Helix 29
AD2
A
871 886Right-handed alpha
Helix 30
AD3
A
892 900Right-handed alpha
Helix 31
AD4
A
908 918Right-handed alpha
Helix 32
AD5
A
920 933Right-handed alpha
Helix 33
AD6
A
936 948Right-handed alpha
Helix 34
AD7
A
952 966Right-handed alpha
Helix 35
AD8
A
1032 1045Right-handed alpha
Helix 36
AD9
A
1058 1062Right-handed 310
Helix 37
AE1
A
1070 1102Right-handed alpha
Helix 38
AE2
A
1123 1146Right-handed alpha
Helix 39
AE3
A
1183 1188Right-handed alpha
Helix 40
AE4
A
1197 1206Right-handed alpha
Helix 41
AE5
B
68 76Right-handed alpha
Helix 42
AE6
B
87 94Right-handed alpha
Helix 43
AE7
B
100 119Right-handed alpha
Helix 44
AE8
B
185 191Right-handed alpha
Helix 45
AE9
B
192 193Right-handed 310
Helix 46
AF1
B
194 198Right-handed 310
Helix 47
AF2
B
244 246Right-handed 310
Helix 48
AF3
B
247 266Right-handed alpha
Helix 49
AF4
B
269 271Right-handed 310
Helix 50
AF5
B
308 315Right-handed alpha
Helix 51
AF6
B
318 323Right-handed 310
Helix 52
AF7
B
341 354Right-handed alpha
Helix 53
AF8
B
391 408Right-handed alpha
Helix 54
AF9
B
417 419Right-handed 310
Helix 55
AG1
B
424 435Right-handed alpha
Helix 56
AG2
B
446 451Right-handed alpha
Helix 57
AG3
B
470 482Right-handed alpha
Helix 58
AG4
C
68 76Right-handed alpha
Helix 59
AG5
C
87 92Right-handed alpha
Helix 60
AG6
C
100 119Right-handed alpha
Helix 61
AG7
C
185 191Right-handed alpha
Helix 62
AG8
C
192 193Right-handed 310
Helix 63
AG9
C
194 198Right-handed 310
Helix 64
AH1
C
244 246Right-handed 310
Helix 65
AH2
C
247 266Right-handed alpha
Helix 66
AH3
C
308 315Right-handed alpha
Helix 67
AH4
C
342 354Right-handed alpha
Helix 68
AH5
C
391 409Right-handed alpha
Helix 69
AH6
C
417 419Right-handed 310
Helix 70
AH7
C
424 435Right-handed alpha
Helix 71
AH8
C
445 450Right-handed alpha
Helix 72
AH9
C
470 482Right-handed alpha
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There are 12 sheets in PDB entry 9IBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
194 198anti-parallel
Strand 5
A
177 183anti-parallel
Strand 6
A
247 251parallel
Strand 7
A
272 276parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
815 818anti-parallel
Strand 3
A
792 794anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 729first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
591 596anti-parallel
Strand 4
A
587 588anti-parallel
Strand 5
A
757 758anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1109first strand
Strand 2
A
1114 1120anti-parallel
Strand 3
A
862 868anti-parallel
Strand 4
A
1161 1164anti-parallel
Strand 5
A
1194 1196anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 217parallel
Strand 3
B
231 243anti-parallel
Strand 4
B
334 340anti-parallel
Strand 5
B
297 307anti-parallel
Strand 6
B
285 292anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 216parallel
Strand 3
C
232 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 304anti-parallel
Strand 6
C
285 293anti-parallel
Strand 7
C
273 279anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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