Analysis of interatomic Contacts of Structural Units in PDB entry:
9ICZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ICZ entry

There are 2 chains in PDB entry 9ICZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 269
B
 VAL 3GLU 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9ICZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
34 48Right-handed alpha
Helix 3
AA3
A
64 74Right-handed alpha
Helix 4
AA4
A
83 95Right-handed alpha
Helix 5
AA5
A
122 127Right-handed 310
Helix 6
AA6
A
128 141Right-handed alpha
Helix 7
AA7
A
155 163Right-handed alpha
Helix 8
AA8
A
224 236Right-handed alpha
Helix 9
AA9
B
15 30Right-handed alpha
Helix 10
AB1
B
34 47Right-handed alpha
Helix 11
AB2
B
64 74Right-handed alpha
Helix 12
AB3
B
83 95Right-handed alpha
Helix 13
AB4
B
122 127Right-handed 310
Helix 14
AB5
B
128 143Right-handed alpha
Helix 15
AB6
B
155 164Right-handed alpha
Helix 16
AB7
B
224 236Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9ICZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
76 81parallel
Strand 3
A
55 59parallel
Strand 4
A
116 119parallel
Strand 5
A
148 154parallel
Strand 6
A
257 264anti-parallel
Strand 7
A
237 244anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 175first strand
Strand 2
A
178 185anti-parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
210 220anti-parallel
Strand 5
B
210 220anti-parallel
Strand 6
B
193 202anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
170 174anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
76 81parallel
Strand 3
B
55 59parallel
Strand 4
B
116 119parallel
Strand 5
B
148 154parallel
Strand 6
B
257 264anti-parallel
Strand 7
B
237 244anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il