Analysis of interatomic Contacts of Structural Units in PDB entry:
9II2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9II2 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 9II2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ARG 30	GLN 855
R	ALA 858	ALA 858
R	TYR 861	THR 864
A	GLY 5	ASN 368
S	ASP 2	VAL 1121
B	ARG 30	GLN 855
B	ALA 858	ALA 858
B	TYR 861	THR 864
C	GLY 5	ASN 368
D	ASP 2	VAL 1121

There are 58 helices in PDB entry 9II2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	64	82	Right-handed alpha
Helix 2	AA2	R	101	114	Right-handed alpha
Helix 3	AA3	R	115	121	Right-handed alpha
Helix 4	AA4	R	150	162	Right-handed alpha
Helix 5	AA5	R	175	179	Right-handed 310
Helix 6	AA6	R	193	208	Right-handed alpha
Helix 7	AA7	R	221	237	Right-handed alpha
Helix 8	AA8	R	252	265	Right-handed alpha
Helix 9	AA9	R	277	291	Right-handed alpha
Helix 10	AB1	R	306	313	Right-handed alpha
Helix 11	AB2	R	330	339	Right-handed alpha
Helix 12	AB3	R	350	360	Right-handed alpha
Helix 13	AB4	R	389	412	Right-handed alpha
Helix 14	AB5	R	419	424	Right-handed alpha
Helix 15	AB6	R	426	435	Right-handed alpha
Helix 16	AB7	R	494	497	Right-handed 310
Helix 17	AB8	R	499	503	Right-handed 310
Helix 18	AB9	R	577	601	Right-handed alpha
Helix 19	AC1	R	604	611	Right-handed alpha
Helix 20	AC2	R	611	633	Right-handed alpha
Helix 21	AC3	R	637	672	Right-handed alpha
Helix 22	AC4	R	686	710	Right-handed alpha
Helix 23	AC5	R	733	758	Right-handed alpha
Helix 24	AC6	R	762	792	Right-handed alpha
Helix 25	AC7	R	795	828	Right-handed alpha
Helix 26	AC8	A	65	72	Right-handed alpha
Helix 27	AC9	A	98	109	Right-handed alpha
Helix 28	AD1	A	243	246	Right-handed 310
Helix 29	AD2	S	1031	1033	Right-handed 310
Helix 30	AD3	B	64	82	Right-handed alpha
Helix 31	AD4	B	101	114	Right-handed alpha
Helix 32	AD5	B	115	121	Right-handed alpha
Helix 33	AD6	B	150	162	Right-handed alpha
Helix 34	AD7	B	175	179	Right-handed 310
Helix 35	AD8	B	193	208	Right-handed alpha
Helix 36	AD9	B	221	237	Right-handed alpha
Helix 37	AE1	B	252	265	Right-handed alpha
Helix 38	AE2	B	277	291	Right-handed alpha
Helix 39	AE3	B	306	313	Right-handed alpha
Helix 40	AE4	B	330	339	Right-handed alpha
Helix 41	AE5	B	350	360	Right-handed alpha
Helix 42	AE6	B	389	412	Right-handed alpha
Helix 43	AE7	B	419	424	Right-handed alpha
Helix 44	AE8	B	426	435	Right-handed alpha
Helix 45	AE9	B	494	497	Right-handed 310
Helix 46	AF1	B	499	503	Right-handed 310
Helix 47	AF2	B	577	601	Right-handed alpha
Helix 48	AF3	B	604	611	Right-handed alpha
Helix 49	AF4	B	611	633	Right-handed alpha
Helix 50	AF5	B	637	672	Right-handed alpha
Helix 51	AF6	B	686	710	Right-handed alpha
Helix 52	AF7	B	733	758	Right-handed alpha
Helix 53	AF8	B	762	792	Right-handed alpha
Helix 54	AF9	B	795	828	Right-handed alpha
Helix 55	AG1	C	65	72	Right-handed alpha
Helix 56	AG2	C	98	109	Right-handed alpha
Helix 57	AG3	C	243	246	Right-handed 310
Helix 58	AG4	D	1031	1033	Right-handed 310

There are 34 sheets in PDB entry 9II2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	34	first strand
Strand 2	R	91	97	anti-parallel
Strand 3	R	39	45	parallel
Strand 4	R	142	147	parallel
Strand 5	R	168	170	parallel
Strand 6	R	187	189	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	240	247	first strand
Strand 2	R	212	218	parallel
Strand 3	R	271	275	parallel
Strand 4	R	296	298	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	321	325	first strand
Strand 2	R	466	470	anti-parallel
Strand 3	R	481	486	anti-parallel
Strand 4	R	490	492	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	439	441	first strand
Strand 2	R	453	455	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	538	539	first strand
Strand 2	R	547	548	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	553	555	first strand
Strand 2	R	562	564	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	567	568	first strand
Strand 2	R	726	730	parallel
Strand 3	R	714	717	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	857	862	first strand
Strand 2	A	6	12	anti-parallel
Strand 3	A	18	22	anti-parallel
Strand 4	A	37	43	anti-parallel
Strand 5	A	113	117	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	85	first strand
Strand 2	A	54	63	anti-parallel
Strand 3	A	140	149	anti-parallel
Strand 4	A	164	168	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	85	first strand
Strand 2	A	54	63	anti-parallel
Strand 3	A	140	149	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	290	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	189	first strand
Strand 2	A	196	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	317	327	anti-parallel
Strand 4	A	231	241	anti-parallel
Strand 5	A	249	258	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	6	8	first strand
Strand 2	S	20	25	anti-parallel
Strand 3	S	71	76	anti-parallel
Strand 4	S	63	68	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	13	first strand
Strand 2	S	103	106	parallel
Strand 3	S	86	91	anti-parallel
Strand 4	S	34	39	anti-parallel
Strand 5	S	46	50	anti-parallel
Strand 6	S	54	55	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1007	1010	first strand
Strand 2	S	1018	1027	anti-parallel
Strand 3	S	1081	1089	anti-parallel
Strand 4	S	1071	1076	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1013	1014	first strand
Strand 2	S	1119	1120	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1060	1063	first strand
Strand 2	S	1048	1055	anti-parallel
Strand 3	S	1035	1042	anti-parallel
Strand 4	S	1096	1103	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	39	45	parallel
Strand 4	B	142	147	parallel
Strand 5	B	168	170	parallel
Strand 6	B	187	189	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	247	first strand
Strand 2	B	212	218	parallel
Strand 3	B	271	275	parallel
Strand 4	B	296	298	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	325	first strand
Strand 2	B	466	470	anti-parallel
Strand 3	B	481	486	anti-parallel
Strand 4	B	490	492	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	547	548	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	555	first strand
Strand 2	B	562	564	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	726	730	parallel
Strand 3	B	714	717	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	862	first strand
Strand 2	C	6	12	anti-parallel
Strand 3	C	18	22	anti-parallel
Strand 4	C	37	43	anti-parallel
Strand 5	C	113	117	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	85	first strand
Strand 2	C	54	63	anti-parallel
Strand 3	C	140	149	anti-parallel
Strand 4	C	164	168	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	85	first strand
Strand 2	C	54	63	anti-parallel
Strand 3	C	140	149	anti-parallel
Strand 4	C	127	129	anti-parallel
Strand 5	C	288	290	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	189	first strand
Strand 2	C	196	203	anti-parallel
Strand 3	C	214	222	anti-parallel
Strand 4	C	266	274	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	343	351	parallel
Strand 3	C	317	327	anti-parallel
Strand 4	C	231	241	anti-parallel
Strand 5	C	249	258	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	103	106	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1007	1010	first strand
Strand 2	D	1018	1027	anti-parallel
Strand 3	D	1081	1089	anti-parallel
Strand 4	D	1071	1076	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1013	1014	first strand
Strand 2	D	1119	1120	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1060	1063	first strand
Strand 2	D	1048	1055	anti-parallel
Strand 3	D	1035	1042	anti-parallel
Strand 4	D	1096	1103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9II2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9II2