Analysis of interatomic Contacts of Structural Units in PDB entry:
9II3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9II3 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9II3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ARG 30	HIS 837
R	ALA 858	ALA 858
R	TYR 861	THR 864
A	GLY 5	ASN 368
S	ASP 2	VAL 1121
B	ARG 30	VAL 834

There are 48 helices in PDB entry 9II3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	64	82	Right-handed alpha
Helix 2	AA2	R	101	114	Right-handed alpha
Helix 3	AA3	R	115	121	Right-handed alpha
Helix 4	AA4	R	150	163	Right-handed alpha
Helix 5	AA5	R	175	180	Right-handed 310
Helix 6	AA6	R	193	208	Right-handed alpha
Helix 7	AA7	R	220	237	Right-handed alpha
Helix 8	AA8	R	254	265	Right-handed alpha
Helix 9	AA9	R	277	291	Right-handed alpha
Helix 10	AB1	R	307	311	Right-handed 310
Helix 11	AB2	R	330	338	Right-handed alpha
Helix 12	AB3	R	350	359	Right-handed alpha
Helix 13	AB4	R	389	412	Right-handed alpha
Helix 14	AB5	R	426	434	Right-handed alpha
Helix 15	AB6	R	493	497	Right-handed 310
Helix 16	AB7	R	577	601	Right-handed alpha
Helix 17	AB8	R	604	633	Right-handed alpha
Helix 18	AB9	R	637	672	Right-handed alpha
Helix 19	AC1	R	683	710	Right-handed alpha
Helix 20	AC2	R	733	758	Right-handed alpha
Helix 21	AC3	R	762	792	Right-handed alpha
Helix 22	AC4	R	796	829	Right-handed alpha
Helix 23	AC5	A	65	72	Right-handed alpha
Helix 24	AC6	A	98	109	Right-handed alpha
Helix 25	AC7	S	1091	1093	Right-handed 310
Helix 26	AC8	B	63	82	Right-handed alpha
Helix 27	AC9	B	101	121	Right-handed alpha
Helix 28	AD1	B	150	163	Right-handed alpha
Helix 29	AD2	B	175	180	Right-handed 310
Helix 30	AD3	B	193	208	Right-handed alpha
Helix 31	AD4	B	220	237	Right-handed alpha
Helix 32	AD5	B	254	265	Right-handed alpha
Helix 33	AD6	B	277	291	Right-handed alpha
Helix 34	AD7	B	307	311	Right-handed 310
Helix 35	AD8	B	330	339	Right-handed alpha
Helix 36	AD9	B	350	359	Right-handed alpha
Helix 37	AE1	B	389	412	Right-handed alpha
Helix 38	AE2	B	419	424	Right-handed alpha
Helix 39	AE3	B	426	434	Right-handed alpha
Helix 40	AE4	B	493	497	Right-handed 310
Helix 41	AE5	B	577	601	Right-handed alpha
Helix 42	AE6	B	604	610	Right-handed alpha
Helix 43	AE7	B	611	633	Right-handed alpha
Helix 44	AE8	B	637	671	Right-handed alpha
Helix 45	AE9	B	683	710	Right-handed alpha
Helix 46	AF1	B	733	758	Right-handed alpha
Helix 47	AF2	B	766	793	Right-handed alpha
Helix 48	AF3	B	795	829	Right-handed alpha

There are 25 sheets in PDB entry 9II3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	32	35	first strand
Strand 2	R	91	97	anti-parallel
Strand 3	R	39	45	parallel
Strand 4	R	142	147	parallel
Strand 5	R	168	170	parallel
Strand 6	R	187	189	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	214	217	first strand
Strand 2	R	272	275	parallel
Strand 3	R	297	299	parallel
Strand 4	R	321	325	parallel
Strand 5	R	466	471	anti-parallel
Strand 6	R	480	486	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	518	521	first strand
Strand 2	R	530	533	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	538	542	first strand
Strand 2	R	545	548	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	553	555	first strand
Strand 2	R	562	564	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	714	718	first strand
Strand 2	R	726	730	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	836	837	first strand
Strand 2	A	75	85	parallel
Strand 3	A	52	63	anti-parallel
Strand 4	A	141	151	anti-parallel
Strand 5	A	164	171	anti-parallel
Strand 6	A	26	28	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	19	22	anti-parallel
Strand 3	A	37	42	anti-parallel
Strand 4	A	112	117	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	288	290	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	267	274	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	317	327	anti-parallel
Strand 4	A	231	241	anti-parallel
Strand 5	A	249	258	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	6	first strand
Strand 2	S	20	26	anti-parallel
Strand 3	S	71	76	anti-parallel
Strand 4	S	67	68	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	54	55	first strand
Strand 2	S	46	50	anti-parallel
Strand 3	S	34	39	anti-parallel
Strand 4	S	86	87	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	54	55	first strand
Strand 2	S	46	50	anti-parallel
Strand 3	S	34	39	anti-parallel
Strand 4	S	90	91	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1008	1010	first strand
Strand 2	S	1018	1026	anti-parallel
Strand 3	S	1081	1089	anti-parallel
Strand 4	S	1071	1076	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1060	1063	first strand
Strand 2	S	1048	1055	anti-parallel
Strand 3	S	1035	1042	anti-parallel
Strand 4	S	1095	1103	anti-parallel
Strand 5	S	1110	1113	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1060	1063	first strand
Strand 2	S	1048	1055	anti-parallel
Strand 3	S	1035	1042	anti-parallel
Strand 4	S	1095	1103	anti-parallel
Strand 5	S	1117	1119	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	39	45	parallel
Strand 4	B	142	147	parallel
Strand 5	B	168	170	parallel
Strand 6	B	187	189	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	59	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	246	first strand
Strand 2	B	212	217	parallel
Strand 3	B	271	275	parallel
Strand 4	B	296	298	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	325	first strand
Strand 2	B	466	470	anti-parallel
Strand 3	B	481	486	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	521	first strand
Strand 2	B	530	532	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	545	548	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	555	first strand
Strand 2	B	562	564	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	726	730	parallel
Strand 3	B	714	717	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9II3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9II3