Analysis of interatomic Contacts of Structural Units in PDB entry:
9II8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9II8 entry

There are 2 chains in PDB entry 9II8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 2 T 5
A
 MET 1LYS 896
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9II8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 59Right-handed alpha
Helix 2
AA2
A
61 66Right-handed 310
Helix 3
AA3
A
70 83Right-handed alpha
Helix 4
AA4
A
91 106Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
133 141Right-handed alpha
Helix 7
AA7
A
152 169Right-handed alpha
Helix 8
AA8
A
172 184Right-handed alpha
Helix 9
AA9
A
190 201Right-handed alpha
Helix 10
AB1
A
235 248Right-handed alpha
Helix 11
AB2
A
252 268Right-handed alpha
Helix 12
AB3
A
281 296Right-handed alpha
Helix 13
AB4
A
308 317Right-handed alpha
Helix 14
AB5
A
317 327Right-handed alpha
Helix 15
AB6
A
337 341Right-handed 310
Helix 16
AB7
A
345 352Right-handed alpha
Helix 17
AB8
A
357 374Right-handed alpha
Helix 18
AB9
A
385 399Right-handed alpha
Helix 19
AC1
A
408 415Right-handed alpha
Helix 20
AC2
A
426 430Right-handed alpha
Helix 21
AC3
A
436 442Right-handed 310
Helix 22
AC4
A
452 460Right-handed alpha
Helix 23
AC5
A
467 478Right-handed alpha
Helix 24
AC6
A
483 498Right-handed alpha
Helix 25
AC7
A
507 535Right-handed alpha
Helix 26
AC8
A
554 575Right-handed alpha
Helix 27
AC9
A
580 606Right-handed alpha
Helix 28
AD1
A
619 621Right-handed 310
Helix 29
AD2
A
631 639Right-handed alpha
Helix 30
AD3
A
660 665Right-handed alpha
Helix 31
AD4
A
683 687Right-handed alpha
Helix 32
AD5
A
703 722Right-handed alpha
Helix 33
AD6
A
732 746Right-handed alpha
Helix 34
AD7
A
747 750Right-handed 310
Helix 35
AD8
A
763 768Right-handed alpha
Helix 36
AD9
A
809 814Right-handed alpha
Helix 37
AE1
A
815 819Right-handed 310
Helix 38
AE2
A
821 826Right-handed alpha
Helix 39
AE3
A
826 840Right-handed alpha
Helix 40
AE4
A
857 862Right-handed alpha
Helix 41
AE5
A
864 870Right-handed alpha
Helix 42
AE6
A
871 873Right-handed 310
Helix 43
AE7
A
881 894Right-handed alpha
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There are 5 sheets in PDB entry 9II8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
86 89parallel
Strand 5
A
115 117parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
217 218anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
421 425parallel
Strand 3
A
301 305parallel
Strand 4
A
444 448parallel
Strand 5
A
646 651parallel
Strand 6
A
272 276parallel
Strand 7
A
674 678parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 466first strand
Strand 2
A
623 628anti-parallel
Strand 3
A
610 614anti-parallel
Strand 4
A
547 549anti-parallel
Strand 5
A
539 540anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 756first strand
Strand 2
A
776 780parallel
Strand 3
A
726 729parallel
Strand 4
A
795 799parallel
Strand 5
A
850 854parallel
Strand 6
A
688 691parallel
Strand 7
A
877 878parallel
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