Analysis of interatomic Contacts of Structural Units in PDB entry:
9IIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IIM entry

There are 4 chains in PDB entry 9IIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 341
C	MET 1	SER 341
B	MET 1	SER 341
D	MET 1	SER 341

There are 52 helices in PDB entry 9IIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	39	49	Right-handed alpha
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	112	122	Right-handed alpha
Helix 5	AA5	A	146	150	Right-handed 310
Helix 6	AA6	A	161	178	Right-handed alpha
Helix 7	AA7	A	221	230	Right-handed alpha
Helix 8	AA8	A	231	234	Right-handed 310
Helix 9	AA9	A	263	278	Right-handed alpha
Helix 10	AB1	A	291	296	Right-handed 310
Helix 11	AB2	A	307	309	Right-handed 310
Helix 12	AB3	A	325	339	Right-handed alpha
Helix 13	AB4	C	10	23	Right-handed alpha
Helix 14	AB5	C	39	48	Right-handed alpha
Helix 15	AB6	C	89	93	Right-handed 310
Helix 16	AB7	C	94	99	Right-handed alpha
Helix 17	AB8	C	112	121	Right-handed alpha
Helix 18	AB9	C	146	150	Right-handed 310
Helix 19	AC1	C	161	179	Right-handed alpha
Helix 20	AC2	C	210	214	Right-handed 310
Helix 21	AC3	C	221	230	Right-handed alpha
Helix 22	AC4	C	231	234	Right-handed 310
Helix 23	AC5	C	263	277	Right-handed alpha
Helix 24	AC6	C	291	296	Right-handed 310
Helix 25	AC7	C	325	338	Right-handed alpha
Helix 26	AC8	B	10	23	Right-handed alpha
Helix 27	AC9	B	39	49	Right-handed alpha
Helix 28	AD1	B	89	93	Right-handed 310
Helix 29	AD2	B	94	99	Right-handed alpha
Helix 30	AD3	B	112	118	Right-handed alpha
Helix 31	AD4	B	146	150	Right-handed 310
Helix 32	AD5	B	161	178	Right-handed alpha
Helix 33	AD6	B	221	230	Right-handed alpha
Helix 34	AD7	B	231	234	Right-handed 310
Helix 35	AD8	B	263	277	Right-handed alpha
Helix 36	AD9	B	291	296	Right-handed 310
Helix 37	AE1	B	307	309	Right-handed 310
Helix 38	AE2	B	325	340	Right-handed alpha
Helix 39	AE3	D	10	23	Right-handed alpha
Helix 40	AE4	D	39	49	Right-handed alpha
Helix 41	AE5	D	89	93	Right-handed 310
Helix 42	AE6	D	94	99	Right-handed alpha
Helix 43	AE7	D	112	123	Right-handed alpha
Helix 44	AE8	D	146	150	Right-handed 310
Helix 45	AE9	D	161	178	Right-handed alpha
Helix 46	AF1	D	210	214	Right-handed 310
Helix 47	AF2	D	221	230	Right-handed alpha
Helix 48	AF3	D	231	234	Right-handed 310
Helix 49	AF4	D	263	277	Right-handed alpha
Helix 50	AF5	D	291	296	Right-handed 310
Helix 51	AF6	D	307	309	Right-handed 310
Helix 52	AF7	D	325	340	Right-handed alpha

There are 12 sheets in PDB entry 9IIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	69	75	anti-parallel
Strand 3	A	78	85	anti-parallel
Strand 4	A	29	35	parallel
Strand 5	A	2	7	parallel
Strand 6	A	102	105	parallel
Strand 7	A	126	129	parallel
Strand 8	A	156	158	parallel
Strand 9	A	139	140	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	180	190	parallel
Strand 4	A	250	258	anti-parallel
Strand 5	A	315	322	anti-parallel
Strand 6	A	302	305	anti-parallel
Strand 7	A	283	286	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	237	244	anti-parallel
Strand 3	A	180	190	parallel
Strand 4	A	250	258	anti-parallel
Strand 5	A	315	322	anti-parallel
Strand 6	A	310	312	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	78	85	anti-parallel
Strand 4	C	29	35	parallel
Strand 5	C	2	7	parallel
Strand 6	C	102	105	parallel
Strand 7	C	127	129	parallel
Strand 8	C	156	158	parallel
Strand 9	C	139	140	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	54	55	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	180	190	parallel
Strand 4	C	250	258	anti-parallel
Strand 5	C	315	322	anti-parallel
Strand 6	C	302	312	anti-parallel
Strand 7	C	283	286	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	69	75	anti-parallel
Strand 3	B	78	85	anti-parallel
Strand 4	B	29	35	parallel
Strand 5	B	2	7	parallel
Strand 6	B	102	105	parallel
Strand 7	B	126	129	parallel
Strand 8	B	156	158	parallel
Strand 9	B	139	140	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	180	190	parallel
Strand 4	B	250	258	anti-parallel
Strand 5	B	315	322	anti-parallel
Strand 6	B	302	305	anti-parallel
Strand 7	B	283	286	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	180	190	parallel
Strand 4	B	250	258	anti-parallel
Strand 5	B	315	322	anti-parallel
Strand 6	B	310	312	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	69	75	anti-parallel
Strand 3	D	78	85	anti-parallel
Strand 4	D	29	35	parallel
Strand 5	D	2	7	parallel
Strand 6	D	102	105	parallel
Strand 7	D	126	129	parallel
Strand 8	D	156	158	parallel
Strand 9	D	139	140	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	237	243	anti-parallel
Strand 3	D	180	189	parallel
Strand 4	D	250	258	anti-parallel
Strand 5	D	315	322	anti-parallel
Strand 6	D	302	305	anti-parallel
Strand 7	D	283	286	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	237	243	anti-parallel
Strand 3	D	180	189	parallel
Strand 4	D	250	258	anti-parallel
Strand 5	D	315	322	anti-parallel
Strand 6	D	310	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IIM