Analysis of interatomic Contacts of Structural Units in PDB entry:
9IIO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IIO entry

There are 40 chains in PDB entry 9IIO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	ASP 1	VAL 40
A	ASP 1	VAL 40
B	ASP 1	VAL 40
C	ASP 1	VAL 40
D	ASP 1	VAL 40
E	ASP 1	VAL 40
F	ASP 1	VAL 40
G	ASP 1	VAL 40
3	ASP 1	VAL 40
H	ASP 1	VAL 40
I	ASP 1	VAL 40
J	ASP 1	VAL 40
K	ASP 1	VAL 40
L	ASP 1	VAL 40
M	ASP 1	VAL 40
N	ASP 1	VAL 40
4	ASP 1	VAL 40
O	ASP 1	VAL 40
P	ASP 1	VAL 40
Q	ASP 1	VAL 40
R	ASP 1	VAL 40
S	ASP 1	VAL 40
T	ASP 1	VAL 40
U	ASP 1	VAL 40
5	ASP 1	VAL 40
V	ASP 1	VAL 40
W	ASP 1	VAL 40
X	ASP 1	VAL 40
Y	ASP 1	VAL 40
Z	ASP 1	VAL 40
a	ASP 1	VAL 40
b	ASP 1	VAL 40
6	ASP 1	VAL 40
c	ASP 1	VAL 40
d	ASP 1	VAL 40
e	ASP 1	VAL 40
f	ASP 1	VAL 40
g	ASP 1	VAL 40
h	ASP 1	VAL 40
i	ASP 1	VAL 40

There are no helices in PDB entry 9IIO

There are 4 sheets in PDB entry 9IIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	22	first strand
Strand 2	B	16	22	parallel
Strand 3	A	16	22	parallel
Strand 4	2	16	21	parallel
Strand 5	J	16	21	parallel
Strand 6	I	16	21	parallel
Strand 7	H	16	21	parallel
Strand 8	3	16	21	parallel
Strand 9	Q	16	21	parallel
Strand 10	P	16	21	parallel
Strand 11	O	16	21	parallel
Strand 12	4	16	21	parallel
Strand 13	X	16	21	parallel
Strand 14	W	16	21	parallel
Strand 15	V	16	21	parallel
Strand 16	5	16	21	parallel
Strand 17	e	16	21	parallel
Strand 18	d	16	22	parallel
Strand 19	c	16	22	parallel
Strand 20	6	16	21	parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	36	first strand
Strand 2	B	30	36	parallel
Strand 3	A	30	36	parallel
Strand 4	2	30	36	parallel
Strand 5	J	30	36	parallel
Strand 6	I	30	36	parallel
Strand 7	H	30	36	parallel
Strand 8	3	30	36	parallel
Strand 9	Q	30	36	parallel
Strand 10	P	30	36	parallel
Strand 11	O	30	36	parallel
Strand 12	4	30	36	parallel
Strand 13	X	30	36	parallel
Strand 14	W	30	36	parallel
Strand 15	V	30	36	parallel
Strand 16	5	30	36	parallel
Strand 17	e	30	36	parallel
Strand 18	d	30	36	parallel
Strand 19	c	30	36	parallel
Strand 20	6	30	36	parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	21	first strand
Strand 2	F	16	21	parallel
Strand 3	E	16	21	parallel
Strand 4	D	16	21	parallel
Strand 5	N	16	21	parallel
Strand 6	M	16	21	parallel
Strand 7	L	16	21	parallel
Strand 8	K	16	21	parallel
Strand 9	U	16	21	parallel
Strand 10	T	16	21	parallel
Strand 11	S	16	21	parallel
Strand 12	R	16	24	parallel
Strand 13	b	16	24	parallel
Strand 14	a	16	24	parallel
Strand 15	Z	16	21	parallel
Strand 16	Y	16	21	parallel
Strand 17	i	16	21	parallel
Strand 18	h	16	21	parallel
Strand 19	g	16	21	parallel
Strand 20	f	16	21	parallel

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There are 20 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	36	first strand
Strand 2	F	30	36	parallel
Strand 3	E	30	36	parallel
Strand 4	D	30	36	parallel
Strand 5	N	30	36	parallel
Strand 6	M	30	36	parallel
Strand 7	L	30	36	parallel
Strand 8	K	30	36	parallel
Strand 9	U	30	36	parallel
Strand 10	T	30	36	parallel
Strand 11	S	30	36	parallel
Strand 12	R	30	36	parallel
Strand 13	b	30	36	parallel
Strand 14	a	30	36	parallel
Strand 15	Z	30	36	parallel
Strand 16	Y	30	36	parallel
Strand 17	i	30	36	parallel
Strand 18	h	30	36	parallel
Strand 19	g	30	36	parallel
Strand 20	f	30	36	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IIO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IIO