Analysis of interatomic Contacts of Structural Units in PDB entry:
9IIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IIZ entry

There are 3 chains in PDB entry 9IIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 584LEU 987
B
 U 1 U 25
C
 A 2 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9IIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
605 611Right-handed alpha
Helix 2
AA2
A
628 630Right-handed 310
Helix 3
AA3
A
631 640Right-handed alpha
Helix 4
AA4
A
641 644Right-handed 310
Helix 5
AA5
A
645 650Right-handed alpha
Helix 6
AA6
A
665 675Right-handed alpha
Helix 7
AA7
A
692 704Right-handed alpha
Helix 8
AA8
A
724 739Right-handed alpha
Helix 9
AA9
A
797 819Right-handed alpha
Helix 10
AB1
A
836 848Right-handed alpha
Helix 11
AB2
A
930 941Right-handed alpha
Helix 12
AB3
A
955 971Right-handed alpha
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There are 3 sheets in PDB entry 9IIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
595 597anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 660first strand
Strand 2
A
624 627parallel
Strand 3
A
684 688parallel
Strand 4
A
712 715parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
786 791first strand
Strand 2
A
773 778anti-parallel
Strand 3
A
755 761anti-parallel
Strand 4
A
825 827parallel
Strand 5
A
864 869parallel
Strand 6
A
918 925anti-parallel
Strand 7
A
902 905anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il