Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJ1 entry

There are 3 chains in PDB entry 9IJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 209LEU 971
B
 U 1 U 25
C
 C 1 A 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9IJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 261Right-handed alpha
Helix 2
AA2
A
314 316Right-handed 310
Helix 3
AA3
A
317 330Right-handed alpha
Helix 4
AA4
A
388 399Right-handed alpha
Helix 5
AA5
A
403 411Right-handed alpha
Helix 6
AA6
A
450 458Right-handed alpha
Helix 7
AA7
A
502 507Right-handed alpha
Helix 8
AA8
A
511 520Right-handed alpha
Helix 9
AA9
A
522 539Right-handed alpha
Helix 10
AB1
A
540 549Right-handed alpha
Helix 11
AB2
A
586 590Right-handed 310
Helix 12
AB3
A
612 624Right-handed alpha
Helix 13
AB4
A
625 628Right-handed 310
Helix 14
AB5
A
649 658Right-handed alpha
Helix 15
AB6
A
659 664Right-handed 310
Helix 16
AB7
A
675 689Right-handed alpha
Helix 17
AB8
A
717 723Right-handed alpha
Helix 18
AB9
A
785 801Right-handed alpha
Helix 19
AC1
A
819 826Right-handed alpha
Helix 20
AC2
A
827 835Right-handed alpha
Helix 21
AC3
A
836 838Right-handed 310
Helix 22
AC4
A
914 927Right-handed alpha
Helix 23
AC5
A
939 955Right-handed alpha
Helix 24
AC6
A
961 965Right-handed 310
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There are 12 sheets in PDB entry 9IJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
276 279anti-parallel
Strand 3
A
238 243anti-parallel
Strand 4
A
299 310anti-parallel
Strand 5
A
286 292anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
355 359anti-parallel
Strand 3
A
380 387anti-parallel
Strand 4
A
496 499anti-parallel
Strand 5
A
415 418anti-parallel
Strand 6
A
424 426anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 368first strand
Strand 2
A
371 377anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
469 472anti-parallel
Strand 3
A
489 491anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
447 449anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
570 572anti-parallel
Strand 3
A
729 730anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 608first strand
Strand 2
A
638 641parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 671first strand
Strand 2
A
695 698parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 740first strand
Strand 2
A
807 813parallel
Strand 3
A
844 851parallel
Strand 4
A
901 909anti-parallel
Strand 5
A
885 890anti-parallel
Strand 6
A
874 875anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 745first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
772 775anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
860 861first strand
Strand 2
A
866 867anti-parallel
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