Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJ3 entry

There are 3 chains in PDB entry 9IJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 221LEU 971
B
 U 1 U 25
C
 G 1 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9IJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 262Right-handed alpha
Helix 2
AA2
A
262 267Right-handed alpha
Helix 3
AA3
A
314 316Right-handed 310
Helix 4
AA4
A
317 331Right-handed alpha
Helix 5
AA5
A
344 347Right-handed 310
Helix 6
AA6
A
387 399Right-handed alpha
Helix 7
AA7
A
402 412Right-handed alpha
Helix 8
AA8
A
450 457Right-handed alpha
Helix 9
AA9
A
502 508Right-handed alpha
Helix 10
AB1
A
508 519Right-handed alpha
Helix 11
AB2
A
522 540Right-handed alpha
Helix 12
AB3
A
540 550Right-handed alpha
Helix 13
AB4
A
609 611Right-handed 310
Helix 14
AB5
A
612 628Right-handed alpha
Helix 15
AB6
A
646 661Right-handed alpha
Helix 16
AB7
A
675 688Right-handed alpha
Helix 17
AB8
A
699 703Right-handed alpha
Helix 18
AB9
A
708 723Right-handed alpha
Helix 19
AC1
A
788 802Right-handed alpha
Helix 20
AC2
A
819 825Right-handed alpha
Helix 21
AC3
A
827 832Right-handed alpha
Helix 22
AC4
A
833 837Right-handed 310
Helix 23
AC5
A
914 928Right-handed alpha
Helix 24
AC6
A
939 955Right-handed alpha
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There are 12 sheets in PDB entry 9IJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
859 861anti-parallel
Strand 3
A
866 867anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
553 554anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
240 246anti-parallel
Strand 4
A
299 304anti-parallel
Strand 5
A
287 292anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
359 361anti-parallel
Strand 4
A
378 380anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
355 356anti-parallel
Strand 3
A
383 384anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 368first strand
Strand 2
A
371 375anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
415 418anti-parallel
Strand 3
A
496 498anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
469 471anti-parallel
Strand 3
A
490 491anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
447 449anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
873 875anti-parallel
Strand 3
A
885 890anti-parallel
Strand 4
A
902 909anti-parallel
Strand 5
A
846 851anti-parallel
Strand 6
A
807 812parallel
Strand 7
A
737 745parallel
Strand 8
A
755 761anti-parallel
Strand 9
A
769 775anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 578first strand
Strand 2
A
571 572anti-parallel
Strand 3
A
729 730anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 671first strand
Strand 2
A
694 698parallel
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