Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJ4 entry

There are 3 chains in PDB entry 9IJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 210LEU 971
B
 U 1 U 25
C
 G 1 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9IJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 262Right-handed alpha
Helix 2
AA2
A
317 331Right-handed alpha
Helix 3
AA3
A
387 399Right-handed alpha
Helix 4
AA4
A
402 412Right-handed alpha
Helix 5
AA5
A
450 458Right-handed alpha
Helix 6
AA6
A
502 507Right-handed alpha
Helix 7
AA7
A
508 520Right-handed alpha
Helix 8
AA8
A
522 540Right-handed alpha
Helix 9
AA9
A
540 550Right-handed alpha
Helix 10
AB1
A
612 631Right-handed alpha
Helix 11
AB2
A
646 661Right-handed alpha
Helix 12
AB3
A
675 688Right-handed alpha
Helix 13
AB4
A
707 722Right-handed alpha
Helix 14
AB5
A
781 802Right-handed alpha
Helix 15
AB6
A
819 826Right-handed alpha
Helix 16
AB7
A
826 834Right-handed alpha
Helix 17
AB8
A
835 838Right-handed 310
Helix 18
AB9
A
914 926Right-handed alpha
Helix 19
AC1
A
939 955Right-handed alpha
Helix 20
AC2
A
963 967Right-handed 310
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There are 11 sheets in PDB entry 9IJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
560 565anti-parallel
Strand 3
A
873 875anti-parallel
Strand 4
A
885 890anti-parallel
Strand 5
A
902 909anti-parallel
Strand 6
A
844 851anti-parallel
Strand 7
A
807 813parallel
Strand 8
A
737 745parallel
Strand 9
A
754 761anti-parallel
Strand 10
A
769 776anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
348 350anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
371 384anti-parallel
Strand 5
A
228 233anti-parallel
Strand 6
A
552 554anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
308 310anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 292first strand
Strand 2
A
299 304anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
415 418anti-parallel
Strand 3
A
496 498anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
469 472anti-parallel
Strand 3
A
489 491anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 442first strand
Strand 2
A
446 449anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
577 579anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
604 608parallel
Strand 3
A
666 671parallel
Strand 4
A
694 698parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
860 861first strand
Strand 2
A
866 867anti-parallel
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