Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJ5 entry

There are 3 chains in PDB entry 9IJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 209LEU 971
B
 U 1 U 25
C
 G 1 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9IJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 261Right-handed alpha
Helix 2
AA2
A
262 267Right-handed alpha
Helix 3
AA3
A
314 316Right-handed 310
Helix 4
AA4
A
317 331Right-handed alpha
Helix 5
AA5
A
388 399Right-handed alpha
Helix 6
AA6
A
402 412Right-handed alpha
Helix 7
AA7
A
450 456Right-handed alpha
Helix 8
AA8
A
508 520Right-handed alpha
Helix 9
AA9
A
522 540Right-handed alpha
Helix 10
AB1
A
540 549Right-handed alpha
Helix 11
AB2
A
612 631Right-handed alpha
Helix 12
AB3
A
646 661Right-handed alpha
Helix 13
AB4
A
675 686Right-handed alpha
Helix 14
AB5
A
707 723Right-handed alpha
Helix 15
AB6
A
782 801Right-handed alpha
Helix 16
AB7
A
816 818Right-handed 310
Helix 17
AB8
A
819 826Right-handed alpha
Helix 18
AB9
A
826 835Right-handed alpha
Helix 19
AC1
A
836 838Right-handed 310
Helix 20
AC2
A
916 928Right-handed alpha
Helix 21
AC3
A
939 955Right-handed alpha
Helix 22
AC4
A
961 965Right-handed 310
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There are 8 sheets in PDB entry 9IJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 774first strand
Strand 2
A
755 761anti-parallel
Strand 3
A
737 745anti-parallel
Strand 4
A
807 812parallel
Strand 5
A
844 851parallel
Strand 6
A
902 909anti-parallel
Strand 7
A
885 890anti-parallel
Strand 8
A
873 875anti-parallel
Strand 9
A
560 565anti-parallel
Strand 10
A
220 225anti-parallel
Strand 11
A
859 861anti-parallel
Strand 12
A
866 867anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
371 387anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
348 350anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
371 387anti-parallel
Strand 5
A
496 499anti-parallel
Strand 6
A
415 418anti-parallel
Strand 7
A
423 426anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
276 279anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
299 310anti-parallel
Strand 5
A
286 292anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
469 472anti-parallel
Strand 3
A
489 491anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
447 449anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 572first strand
Strand 2
A
729 730anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
605 608parallel
Strand 3
A
667 671parallel
Strand 4
A
694 698parallel
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