Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IJ6 entry

There are 4 chains in PDB entry 9IJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 341
C	MET 1	SER 341
B	MET 1	SER 341
D	MET 1	SER 341

There are 55 helices in PDB entry 9IJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	39	49	Right-handed alpha
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	94	99	Right-handed alpha
Helix 5	AA5	A	112	117	Right-handed alpha
Helix 6	AA6	A	117	122	Right-handed alpha
Helix 7	AA7	A	146	150	Right-handed 310
Helix 8	AA8	A	163	179	Right-handed alpha
Helix 9	AA9	A	221	230	Right-handed alpha
Helix 10	AB1	A	231	234	Right-handed 310
Helix 11	AB2	A	263	278	Right-handed alpha
Helix 12	AB3	A	291	296	Right-handed 310
Helix 13	AB4	A	307	309	Right-handed 310
Helix 14	AB5	A	325	338	Right-handed alpha
Helix 15	AB6	C	10	23	Right-handed alpha
Helix 16	AB7	C	39	49	Right-handed alpha
Helix 17	AB8	C	89	93	Right-handed 310
Helix 18	AB9	C	94	99	Right-handed alpha
Helix 19	AC1	C	112	123	Right-handed alpha
Helix 20	AC2	C	146	150	Right-handed 310
Helix 21	AC3	C	161	179	Right-handed alpha
Helix 22	AC4	C	210	214	Right-handed 310
Helix 23	AC5	C	221	230	Right-handed alpha
Helix 24	AC6	C	231	234	Right-handed 310
Helix 25	AC7	C	263	277	Right-handed alpha
Helix 26	AC8	C	291	296	Right-handed 310
Helix 27	AC9	C	307	309	Right-handed 310
Helix 28	AD1	C	325	339	Right-handed alpha
Helix 29	AD2	B	10	23	Right-handed alpha
Helix 30	AD3	B	39	49	Right-handed alpha
Helix 31	AD4	B	89	93	Right-handed 310
Helix 32	AD5	B	94	99	Right-handed alpha
Helix 33	AD6	B	112	117	Right-handed alpha
Helix 34	AD7	B	117	122	Right-handed alpha
Helix 35	AD8	B	163	178	Right-handed alpha
Helix 36	AD9	B	210	214	Right-handed 310
Helix 37	AE1	B	221	230	Right-handed alpha
Helix 38	AE2	B	231	234	Right-handed 310
Helix 39	AE3	B	263	277	Right-handed alpha
Helix 40	AE4	B	291	296	Right-handed 310
Helix 41	AE5	B	307	309	Right-handed 310
Helix 42	AE6	B	325	340	Right-handed alpha
Helix 43	AE7	D	10	23	Right-handed alpha
Helix 44	AE8	D	39	49	Right-handed alpha
Helix 45	AE9	D	89	93	Right-handed 310
Helix 46	AF1	D	112	117	Right-handed alpha
Helix 47	AF2	D	117	122	Right-handed alpha
Helix 48	AF3	D	146	150	Right-handed 310
Helix 49	AF4	D	163	178	Right-handed alpha
Helix 50	AF5	D	221	230	Right-handed alpha
Helix 51	AF6	D	231	234	Right-handed 310
Helix 52	AF7	D	263	277	Right-handed alpha
Helix 53	AF8	D	291	296	Right-handed 310
Helix 54	AF9	D	307	309	Right-handed 310
Helix 55	AG1	D	325	338	Right-handed alpha

There are 13 sheets in PDB entry 9IJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	69	75	anti-parallel
Strand 3	A	78	85	anti-parallel
Strand 4	A	29	35	parallel
Strand 5	A	2	7	parallel
Strand 6	A	102	105	parallel
Strand 7	A	127	129	parallel
Strand 8	A	156	158	parallel
Strand 9	A	139	140	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	180	189	parallel
Strand 4	A	250	258	anti-parallel
Strand 5	A	315	322	anti-parallel
Strand 6	A	302	305	anti-parallel
Strand 7	A	283	286	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	180	189	parallel
Strand 4	A	250	258	anti-parallel
Strand 5	A	315	322	anti-parallel
Strand 6	A	310	312	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	78	85	anti-parallel
Strand 4	C	29	35	parallel
Strand 5	C	2	7	parallel
Strand 6	C	102	105	parallel
Strand 7	C	126	129	parallel
Strand 8	C	156	158	parallel
Strand 9	C	139	140	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	180	190	parallel
Strand 4	C	250	258	anti-parallel
Strand 5	C	315	322	anti-parallel
Strand 6	C	302	305	anti-parallel
Strand 7	C	283	286	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	180	190	parallel
Strand 4	C	250	258	anti-parallel
Strand 5	C	315	322	anti-parallel
Strand 6	C	310	312	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	69	75	anti-parallel
Strand 3	B	62	64	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	69	75	anti-parallel
Strand 3	B	78	85	anti-parallel
Strand 4	B	30	35	parallel
Strand 5	B	3	7	parallel
Strand 6	B	102	105	parallel
Strand 7	B	126	129	parallel
Strand 8	B	156	158	parallel
Strand 9	B	139	140	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	180	190	parallel
Strand 4	B	250	258	anti-parallel
Strand 5	B	315	322	anti-parallel
Strand 6	B	302	305	anti-parallel
Strand 7	B	283	286	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	180	190	parallel
Strand 4	B	250	258	anti-parallel
Strand 5	B	315	322	anti-parallel
Strand 6	B	310	312	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	69	75	anti-parallel
Strand 3	D	78	85	anti-parallel
Strand 4	D	29	35	parallel
Strand 5	D	2	7	parallel
Strand 6	D	102	105	parallel
Strand 7	D	127	129	parallel
Strand 8	D	156	158	parallel
Strand 9	D	139	140	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	180	190	parallel
Strand 4	D	250	258	anti-parallel
Strand 5	D	315	322	anti-parallel
Strand 6	D	302	305	anti-parallel
Strand 7	D	283	286	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	180	190	parallel
Strand 4	D	250	258	anti-parallel
Strand 5	D	315	322	anti-parallel
Strand 6	D	310	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJ6