Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJK entry

There are 4 chains in PDB entry 9IJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 288
B
 MET 1PRO 288
C
 MET 1PRO 288
D
 MET 1PRO 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 9IJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
57 65Right-handed alpha
Helix 4
AA4
A
87 104Right-handed alpha
Helix 5
AA5
A
114 127Right-handed alpha
Helix 6
AA6
A
152 164Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
185 199Right-handed alpha
Helix 9
AA9
A
199 213Right-handed alpha
Helix 10
AB1
A
223 227Right-handed 310
Helix 11
AB2
A
244 254Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
273 287Right-handed alpha
Helix 14
AB5
B
7 11Right-handed alpha
Helix 15
AB6
B
49 54Right-handed alpha
Helix 16
AB7
B
57 64Right-handed alpha
Helix 17
AB8
B
87 104Right-handed alpha
Helix 18
AB9
B
114 127Right-handed alpha
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
166 178Right-handed alpha
Helix 21
AC3
B
185 199Right-handed alpha
Helix 22
AC4
B
200 213Right-handed alpha
Helix 23
AC5
B
223 227Right-handed 310
Helix 24
AC6
B
243 254Right-handed alpha
Helix 25
AC7
B
268 273Right-handed alpha
Helix 26
AC8
B
273 287Right-handed alpha
Helix 27
AC9
C
49 54Right-handed alpha
Helix 28
AD1
C
57 64Right-handed alpha
Helix 29
AD2
C
87 104Right-handed alpha
Helix 30
AD3
C
114 127Right-handed alpha
Helix 31
AD4
C
152 164Right-handed alpha
Helix 32
AD5
C
166 178Right-handed alpha
Helix 33
AD6
C
180 184Right-handed 310
Helix 34
AD7
C
185 199Right-handed alpha
Helix 35
AD8
C
199 213Right-handed alpha
Helix 36
AD9
C
220 227Right-handed 310
Helix 37
AE1
C
244 254Right-handed alpha
Helix 38
AE2
C
268 273Right-handed alpha
Helix 39
AE3
C
273 287Right-handed alpha
Helix 40
AE4
D
7 11Right-handed alpha
Helix 41
AE5
D
49 54Right-handed alpha
Helix 42
AE6
D
57 65Right-handed alpha
Helix 43
AE7
D
87 104Right-handed alpha
Helix 44
AE8
D
114 127Right-handed alpha
Helix 45
AE9
D
152 164Right-handed alpha
Helix 46
AF1
D
166 178Right-handed alpha
Helix 47
AF2
D
180 184Right-handed 310
Helix 48
AF3
D
185 199Right-handed alpha
Helix 49
AF4
D
199 213Right-handed alpha
Helix 50
AF5
D
221 227Right-handed 310
Helix 51
AF6
D
243 254Right-handed alpha
Helix 52
AF7
D
268 273Right-handed alpha
Helix 53
AF8
D
274 287Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9IJK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
22 31anti-parallel
Strand 3
A
67 71anti-parallel
Strand 4
A
37 41parallel
Strand 5
A
108 113parallel
Strand 6
A
131 137parallel
Strand 7
A
231 236parallel
Strand 8
A
258 262parallel
Strand 9
B
258 262anti-parallel
Strand 10
B
231 236parallel
Strand 11
B
131 137parallel
Strand 12
B
108 113parallel
Strand 13
B
37 40parallel
Strand 14
B
67 71parallel
Strand 15
B
22 31anti-parallel
Strand 16
B
12 19anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 19first strand
Strand 2
C
22 31anti-parallel
Strand 3
C
67 71anti-parallel
Strand 4
C
37 41parallel
Strand 5
C
108 113parallel
Strand 6
C
131 137parallel
Strand 7
C
231 236parallel
Strand 8
C
258 262parallel
Strand 9
D
258 262anti-parallel
Strand 10
D
230 236parallel
Strand 11
D
131 137parallel
Strand 12
D
108 113parallel
Strand 13
D
37 41parallel
Strand 14
D
67 71parallel
Strand 15
D
22 31anti-parallel
Strand 16
D
12 19anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il