Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9IJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 31GLU 487
A
 ALA 489ALA 489
A
 ALA 492ALA 492
A
 LEU 496ASP 499
C
 THR 6PRO 356
H
 VAL 5LYS 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9IJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 68Right-handed alpha
Helix 2
AA2
A
73 100Right-handed alpha
Helix 3
AA3
A
109 139Right-handed alpha
Helix 4
AA4
A
140 145Right-handed alpha
Helix 5
AA5
A
148 153Right-handed alpha
Helix 6
AA6
A
154 179Right-handed alpha
Helix 7
AA7
A
191 196Right-handed alpha
Helix 8
AA8
A
200 211Right-handed alpha
Helix 9
AA9
A
212 231Right-handed alpha
Helix 10
AB1
A
258 263Right-handed alpha
Helix 11
AB2
A
263 289Right-handed alpha
Helix 12
AB3
A
295 319Right-handed alpha
Helix 13
AB4
A
321 330Right-handed alpha
Helix 14
AB5
A
331 334Right-handed 310
Helix 15
AB6
C
98 108Right-handed alpha
Helix 16
AB7
C
159 161Right-handed 310
Helix 17
AB8
H
90 94Right-handed 310
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There are 15 sheets in PDB entry 9IJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
C
9 10anti-parallel
Strand 3
C
19 22anti-parallel
Strand 4
C
38 42anti-parallel
Strand 5
C
113 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
169 172parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 85first strand
Strand 2
C
52 62anti-parallel
Strand 3
C
141 143anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 85first strand
Strand 2
C
52 62anti-parallel
Strand 3
C
146 151anti-parallel
Strand 4
C
163 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 129first strand
Strand 2
C
288 290anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 184first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
214 222anti-parallel
Strand 4
C
266 268anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 184first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
214 222anti-parallel
Strand 4
C
271 274anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
348 351parallel
Strand 3
C
317 329anti-parallel
Strand 4
C
228 241anti-parallel
Strand 5
C
251 258anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
348 351parallel
Strand 3
C
317 329anti-parallel
Strand 4
C
342 345anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
22 28anti-parallel
Strand 3
H
81 85anti-parallel
Strand 4
H
72 76anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 98anti-parallel
Strand 4
H
35 42anti-parallel
Strand 5
H
48 55anti-parallel
Strand 6
H
60 62anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 98anti-parallel
Strand 4
H
35 42anti-parallel
Strand 5
H
101 103anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
143 146first strand
Strand 2
H
158 164anti-parallel
Strand 3
H
209 214anti-parallel
Strand 4
H
204 206anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 151first strand
Strand 2
H
243 244parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
192 193first strand
Strand 2
H
185 188anti-parallel
Strand 3
H
172 177anti-parallel
Strand 4
H
224 229anti-parallel
Strand 5
H
236 237anti-parallel
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