Analysis of interatomic Contacts of Structural Units in PDB entry:
9IJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IJS entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9IJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 42GLU 487
A
 ALA 489ALA 489
A
 ALA 492ALA 492
A
 LEU 496ASP 499
C
 THR 6PRO 356
H
 VAL 5ILE 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9IJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 68Right-handed alpha
Helix 2
AA2
A
74 104Right-handed alpha
Helix 3
AA3
A
110 144Right-handed alpha
Helix 4
AA4
A
154 179Right-handed alpha
Helix 5
AA5
A
184 188Right-handed 310
Helix 6
AA6
A
191 196Right-handed alpha
Helix 7
AA7
A
200 211Right-handed alpha
Helix 8
AA8
A
211 229Right-handed alpha
Helix 9
AA9
A
262 290Right-handed alpha
Helix 10
AB1
A
295 321Right-handed alpha
Helix 11
AB2
A
321 334Right-handed alpha
Helix 12
AB3
C
98 108Right-handed alpha
Helix 13
AB4
C
159 161Right-handed 310
Helix 14
AB5
H
31 33Right-handed 310
Helix 15
AB6
H
90 94Right-handed 310
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There are 12 sheets in PDB entry 9IJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
C
9 10anti-parallel
Strand 3
C
18 22anti-parallel
Strand 4
C
38 43anti-parallel
Strand 5
C
113 116anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
163 171parallel
Strand 3
C
141 150anti-parallel
Strand 4
C
53 62anti-parallel
Strand 5
C
78 87anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 129first strand
Strand 2
C
288 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 188first strand
Strand 2
C
197 202anti-parallel
Strand 3
C
214 222anti-parallel
Strand 4
C
266 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
342 351parallel
Strand 3
C
317 329anti-parallel
Strand 4
C
228 241anti-parallel
Strand 5
C
247 248anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 208first strand
Strand 2
C
342 351parallel
Strand 3
C
317 329anti-parallel
Strand 4
C
228 241anti-parallel
Strand 5
C
251 258anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
7 9first strand
Strand 2
H
22 27anti-parallel
Strand 3
H
81 85anti-parallel
Strand 4
H
72 76anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
35 42anti-parallel
Strand 4
H
96 103anti-parallel
Strand 5
H
110 113anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
35 42anti-parallel
Strand 4
H
96 103anti-parallel
Strand 5
H
117 118anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 146first strand
Strand 2
H
158 163anti-parallel
Strand 3
H
209 214anti-parallel
Strand 4
H
204 206anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
149 151first strand
Strand 2
H
242 244parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
192 193first strand
Strand 2
H
184 188anti-parallel
Strand 3
H
172 177anti-parallel
Strand 4
H
224 229anti-parallel
Strand 5
H
236 237anti-parallel
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