Analysis of interatomic Contacts of Structural Units in PDB entry:
9IM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IM0 entry

There are 3 chains in PDB entry 9IM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 2ARG 226
O
 PHE 240PRO 320
A
 ASP 2PRO 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9IM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
20 26Right-handed alpha
Helix 2
AA2
D
36 47Right-handed alpha
Helix 3
AA3
D
78 104Right-handed alpha
Helix 4
AA4
D
108 119Right-handed alpha
Helix 5
AA5
D
144 161Right-handed alpha
Helix 6
AA6
D
165 169Right-handed 310
Helix 7
AA7
D
170 174Right-handed 310
Helix 8
AA8
D
203 208Right-handed 310
Helix 9
AA9
O
242 254Right-handed alpha
Helix 10
AB1
A
36 47Right-handed alpha
Helix 11
AB2
A
84 104Right-handed alpha
Helix 12
AB3
A
108 117Right-handed alpha
Helix 13
AB4
A
144 150Right-handed alpha
Helix 14
AB5
A
150 161Right-handed alpha
Helix 15
AB6
A
165 169Right-handed 310
Helix 16
AB7
A
203 208Right-handed 310
Helix 17
AB8
A
239 244Right-handed 310
Helix 18
AB9
A
245 254Right-handed alpha
Helix 19
AC1
A
259 263Right-handed 310
Helix 20
AC2
A
310 314Right-handed 310
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There are 9 sheets in PDB entry 9IM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
11 14anti-parallel
Strand 3
D
53 54anti-parallel
Strand 4
D
180 181anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 73first strand
Strand 2
D
131 143anti-parallel
Strand 3
D
120 121anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 73first strand
Strand 2
D
131 143anti-parallel
Strand 3
D
219 220parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 125first strand
Strand 2
D
195 196anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
294 299first strand
Strand 2
O
302 307anti-parallel
Strand 3
O
317 319anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
53 55anti-parallel
Strand 4
A
180 181anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 71first strand
Strand 2
A
133 143anti-parallel
Strand 3
A
219 221parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
196 197anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 299first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
317 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il