Analysis of interatomic Contacts of Structural Units in PDB entry:
9IMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IMJ entry

There is 1 chain in PDB entry 9IMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9IMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
45 66Right-handed alpha
Helix 4
AA4
A
107 114Right-handed alpha
Helix 5
AA5
A
123 127Right-handed 310
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
189 192Right-handed 310
Helix 8
AA8
A
198 216Right-handed alpha
Helix 9
AA9
A
231 238Right-handed alpha
Helix 10
AB1
A
277 300Right-handed alpha
Helix 11
AB2
A
304 310Right-handed alpha
Helix 12
AB3
A
337 345Right-handed alpha
Helix 13
AB4
A
348 358Right-handed alpha
Helix 14
AB5
A
359 373Right-handed alpha
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There are 4 sheets in PDB entry 9IMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
38 44anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 175first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
144 153anti-parallel
Strand 4
A
179 187anti-parallel
Strand 5
A
82 87anti-parallel
Strand 6
A
73 79anti-parallel
Strand 7
A
220 223parallel
Strand 8
A
226 228anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
104 106anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
263 268parallel
Strand 5
A
271 272anti-parallel
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