Analysis of interatomic Contacts of Structural Units in PDB entry:
9IML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IML entry

There are 8 chains in PDB entry 9IML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 211	GLU 547
B	MET 1	GLY 75
C	THR 211	ILE 536
D	MET 1	GLY 75
E	GLY 212	GLU 547
F	MET 1	GLY 75
G	TYR 213	VAL 531
H	MET 1	GLY 75

There are 69 helices in PDB entry 9IML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	222	235	Right-handed alpha
Helix 2	AA2	A	235	244	Right-handed alpha
Helix 3	AA3	A	255	270	Right-handed alpha
Helix 4	AA4	A	276	283	Right-handed alpha
Helix 5	AA5	A	288	292	Right-handed 310
Helix 6	AA6	A	295	311	Right-handed alpha
Helix 7	AA7	A	318	325	Right-handed alpha
Helix 8	AA8	A	359	369	Right-handed alpha
Helix 9	AA9	A	374	378	Right-handed 310
Helix 10	AB1	A	382	384	Right-handed 310
Helix 11	AB2	A	434	437	Right-handed 310
Helix 12	AB3	A	489	494	Right-handed alpha
Helix 13	AB4	A	495	498	Right-handed 310
Helix 14	AB5	A	523	528	Right-handed alpha
Helix 15	AB6	A	532	536	Right-handed 310
Helix 16	AB7	A	537	546	Right-handed alpha
Helix 17	AB8	B	22	35	Right-handed alpha
Helix 18	AB9	B	37	41	Right-handed 310
Helix 19	AC1	B	55	60	Right-handed 310
Helix 20	AC2	C	222	234	Right-handed alpha
Helix 21	AC3	C	235	244	Right-handed alpha
Helix 22	AC4	C	255	270	Right-handed alpha
Helix 23	AC5	C	276	283	Right-handed alpha
Helix 24	AC6	C	287	292	Right-handed 310
Helix 25	AC7	C	295	311	Right-handed alpha
Helix 26	AC8	C	318	325	Right-handed alpha
Helix 27	AC9	C	359	369	Right-handed alpha
Helix 28	AD1	C	374	378	Right-handed 310
Helix 29	AD2	C	382	384	Right-handed 310
Helix 30	AD3	C	434	437	Right-handed 310
Helix 31	AD4	C	489	494	Right-handed alpha
Helix 32	AD5	C	495	498	Right-handed 310
Helix 33	AD6	C	523	528	Right-handed alpha
Helix 34	AD7	C	532	536	Right-handed 310
Helix 35	AD8	D	22	35	Right-handed alpha
Helix 36	AD9	D	56	60	Right-handed 310
Helix 37	AE1	E	222	234	Right-handed alpha
Helix 38	AE2	E	235	244	Right-handed alpha
Helix 39	AE3	E	255	270	Right-handed alpha
Helix 40	AE4	E	276	283	Right-handed alpha
Helix 41	AE5	E	286	292	Right-handed 310
Helix 42	AE6	E	295	311	Right-handed alpha
Helix 43	AE7	E	318	325	Right-handed alpha
Helix 44	AE8	E	359	368	Right-handed alpha
Helix 45	AE9	E	374	378	Right-handed 310
Helix 46	AF1	E	382	384	Right-handed 310
Helix 47	AF2	E	434	437	Right-handed 310
Helix 48	AF3	E	494	498	Right-handed 310
Helix 49	AF4	E	521	528	Right-handed alpha
Helix 50	AF5	E	537	546	Right-handed alpha
Helix 51	AF6	F	22	35	Right-handed alpha
Helix 52	AF7	F	37	41	Right-handed 310
Helix 53	AF8	F	55	60	Right-handed 310
Helix 54	AF9	G	222	234	Right-handed alpha
Helix 55	AG1	G	235	244	Right-handed alpha
Helix 56	AG2	G	255	267	Right-handed alpha
Helix 57	AG3	G	276	283	Right-handed alpha
Helix 58	AG4	G	287	292	Right-handed 310
Helix 59	AG5	G	296	311	Right-handed alpha
Helix 60	AG6	G	318	325	Right-handed alpha
Helix 61	AG7	G	359	368	Right-handed alpha
Helix 62	AG8	G	374	378	Right-handed 310
Helix 63	AG9	G	382	384	Right-handed 310
Helix 64	AH1	G	434	437	Right-handed 310
Helix 65	AH2	G	494	498	Right-handed 310
Helix 66	AH3	G	507	509	Right-handed 310
Helix 67	AH4	G	523	528	Right-handed alpha
Helix 68	AH5	H	22	35	Right-handed alpha
Helix 69	AH6	H	56	60	Right-handed 310

There are 23 sheets in PDB entry 9IML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	347	first strand
Strand 2	A	326	334	anti-parallel
Strand 3	A	389	397	anti-parallel
Strand 4	A	370	373	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	457	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	401	406	parallel
Strand 3	A	511	520	anti-parallel
Strand 4	A	447	457	anti-parallel
Strand 5	A	464	469	anti-parallel
Strand 6	A	478	481	anti-parallel
Strand 7	A	484	487	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	386	387	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	326	334	anti-parallel
Strand 3	C	389	397	anti-parallel
Strand 4	C	371	373	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	401	407	parallel
Strand 3	C	511	520	anti-parallel
Strand 4	C	447	458	anti-parallel
Strand 5	C	430	432	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	401	407	parallel
Strand 3	C	511	520	anti-parallel
Strand 4	C	447	458	anti-parallel
Strand 5	C	463	469	anti-parallel
Strand 6	C	478	481	anti-parallel
Strand 7	C	484	487	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	386	387	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	347	first strand
Strand 2	E	326	334	anti-parallel
Strand 3	E	389	397	anti-parallel
Strand 4	E	371	373	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	353	first strand
Strand 2	E	401	407	parallel
Strand 3	E	511	520	anti-parallel
Strand 4	E	447	458	anti-parallel
Strand 5	E	430	432	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	353	first strand
Strand 2	E	401	407	parallel
Strand 3	E	511	520	anti-parallel
Strand 4	E	447	458	anti-parallel
Strand 5	E	463	469	anti-parallel
Strand 6	E	478	481	anti-parallel
Strand 7	E	484	487	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	380	first strand
Strand 2	E	386	387	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	410	first strand
Strand 2	E	419	420	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	66	70	parallel
Strand 4	F	42	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	295	first strand
Strand 2	H	74	75	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	340	347	first strand
Strand 2	G	326	334	anti-parallel
Strand 3	G	389	397	anti-parallel
Strand 4	G	371	373	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	353	first strand
Strand 2	G	401	407	parallel
Strand 3	G	511	520	anti-parallel
Strand 4	G	447	458	anti-parallel
Strand 5	G	430	432	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	353	first strand
Strand 2	G	401	407	parallel
Strand 3	G	511	520	anti-parallel
Strand 4	G	447	458	anti-parallel
Strand 5	G	463	469	anti-parallel
Strand 6	G	478	481	anti-parallel
Strand 7	G	484	487	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	380	first strand
Strand 2	G	386	387	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	412	first strand
Strand 2	G	415	415	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	66	70	parallel
Strand 4	H	42	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IML

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IML