Analysis of interatomic Contacts of Structural Units in PDB entry:
9IN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IN6 entry

There are 8 chains in PDB entry 9IN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ALA 2	ALA 399
N	ALA 2	ALA 399
O	ALA 2	ALA 399
P	ALA 2	ALA 399
Q	ALA 2	ALA 399
R	ALA 2	ALA 399
T	ALA 2	ALA 399
c	MET 1	GLU 111

There are 86 helices in PDB entry 9IN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	39	43	Right-handed 310
Helix 2	AA2	M	85	89	Right-handed 310
Helix 3	AA3	M	126	130	Right-handed 310
Helix 4	AA4	M	180	184	Right-handed alpha
Helix 5	AA5	M	191	215	Right-handed alpha
Helix 6	AA6	M	233	238	Right-handed alpha
Helix 7	AA7	M	255	264	Right-handed alpha
Helix 8	AA8	M	265	267	Right-handed 310
Helix 9	AA9	M	283	296	Right-handed alpha
Helix 10	AB1	M	331	336	Right-handed alpha
Helix 11	AB2	M	339	341	Right-handed 310
Helix 12	AB3	M	348	350	Right-handed 310
Helix 13	AB4	M	388	392	Right-handed 310
Helix 14	AB5	N	9	13	Right-handed 310
Helix 15	AB6	N	38	44	Right-handed alpha
Helix 16	AB7	N	84	89	Right-handed 310
Helix 17	AB8	N	126	130	Right-handed 310
Helix 18	AB9	N	180	184	Right-handed alpha
Helix 19	AC1	N	191	215	Right-handed alpha
Helix 20	AC2	N	233	238	Right-handed alpha
Helix 21	AC3	N	255	265	Right-handed alpha
Helix 22	AC4	N	266	268	Right-handed 310
Helix 23	AC5	N	283	296	Right-handed alpha
Helix 24	AC6	N	331	337	Right-handed alpha
Helix 25	AC7	N	339	342	Right-handed 310
Helix 26	AC8	N	348	350	Right-handed 310
Helix 27	AC9	N	388	392	Right-handed 310
Helix 28	AD1	O	38	43	Right-handed alpha
Helix 29	AD2	O	85	89	Right-handed 310
Helix 30	AD3	O	126	130	Right-handed 310
Helix 31	AD4	O	180	185	Right-handed alpha
Helix 32	AD5	O	191	215	Right-handed alpha
Helix 33	AD6	O	233	238	Right-handed alpha
Helix 34	AD7	O	255	265	Right-handed alpha
Helix 35	AD8	O	283	296	Right-handed alpha
Helix 36	AD9	O	331	337	Right-handed alpha
Helix 37	AE1	O	339	342	Right-handed 310
Helix 38	AE2	O	348	350	Right-handed 310
Helix 39	AE3	O	388	392	Right-handed 310
Helix 40	AE4	P	38	44	Right-handed alpha
Helix 41	AE5	P	126	130	Right-handed 310
Helix 42	AE6	P	180	185	Right-handed alpha
Helix 43	AE7	P	191	215	Right-handed alpha
Helix 44	AE8	P	233	238	Right-handed alpha
Helix 45	AE9	P	255	263	Right-handed alpha
Helix 46	AF1	P	264	268	Right-handed 310
Helix 47	AF2	P	283	296	Right-handed alpha
Helix 48	AF3	P	331	337	Right-handed alpha
Helix 49	AF4	P	339	342	Right-handed 310
Helix 50	AF5	P	388	392	Right-handed 310
Helix 51	AF6	Q	38	44	Right-handed alpha
Helix 52	AF7	Q	85	89	Right-handed 310
Helix 53	AF8	Q	126	130	Right-handed 310
Helix 54	AF9	Q	180	185	Right-handed alpha
Helix 55	AG1	Q	191	215	Right-handed alpha
Helix 56	AG2	Q	233	238	Right-handed alpha
Helix 57	AG3	Q	255	265	Right-handed alpha
Helix 58	AG4	Q	283	296	Right-handed alpha
Helix 59	AG5	Q	331	337	Right-handed alpha
Helix 60	AG6	Q	339	341	Right-handed 310
Helix 61	AG7	Q	348	350	Right-handed 310
Helix 62	AG8	Q	388	392	Right-handed 310
Helix 63	AG9	R	38	44	Right-handed alpha
Helix 64	AH1	R	85	89	Right-handed 310
Helix 65	AH2	R	126	130	Right-handed 310
Helix 66	AH3	R	180	185	Right-handed alpha
Helix 67	AH4	R	191	215	Right-handed alpha
Helix 68	AH5	R	233	238	Right-handed alpha
Helix 69	AH6	R	255	265	Right-handed alpha
Helix 70	AH7	R	266	268	Right-handed 310
Helix 71	AH8	R	283	296	Right-handed alpha
Helix 72	AH9	R	331	337	Right-handed alpha
Helix 73	AI1	R	339	341	Right-handed 310
Helix 74	AI2	R	348	350	Right-handed 310
Helix 75	AI3	R	388	392	Right-handed 310
Helix 76	AI4	T	9	13	Right-handed 310
Helix 77	AI5	T	35	40	Right-handed alpha
Helix 78	AI6	T	84	88	Right-handed 310
Helix 79	AI7	T	180	185	Right-handed alpha
Helix 80	AI8	T	191	215	Right-handed alpha
Helix 81	AI9	T	233	238	Right-handed alpha
Helix 82	AJ1	T	255	266	Right-handed alpha
Helix 83	AJ2	T	283	297	Right-handed alpha
Helix 84	AJ3	T	331	337	Right-handed alpha
Helix 85	AJ4	T	348	350	Right-handed 310
Helix 86	AJ5	T	388	392	Right-handed 310

There are 39 sheets in PDB entry 9IN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	21	22	first strand
Strand 2	N	53	60	parallel
Strand 3	M	27	29	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	21	22	first strand
Strand 2	N	53	60	parallel
Strand 3	N	163	168	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	48	first strand
Strand 2	M	352	364	parallel
Strand 3	M	373	386	anti-parallel
Strand 4	M	163	179	anti-parallel
Strand 5	M	53	60	anti-parallel
Strand 6	R	21	22	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	48	first strand
Strand 2	M	352	364	parallel
Strand 3	M	373	386	anti-parallel
Strand 4	M	163	179	anti-parallel
Strand 5	M	53	60	anti-parallel
Strand 6	R	27	29	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	67	first strand
Strand 2	M	140	146	anti-parallel
Strand 3	M	93	97	anti-parallel
Strand 4	M	108	111	anti-parallel
Strand 5	M	120	124	anti-parallel
Strand 6	M	78	80	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	218	221	first strand
Strand 2	M	227	230	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	242	244	first strand
Strand 2	M	393	396	parallel
Strand 3	M	343	347	anti-parallel
Strand 4	M	277	282	anti-parallel
Strand 5	M	325	330	parallel
Strand 6	M	312	320	anti-parallel
Strand 7	N	318	320	parallel
Strand 8	N	325	330	anti-parallel
Strand 9	N	277	282	parallel
Strand 10	N	344	347	anti-parallel
Strand 11	N	393	396	anti-parallel
Strand 12	N	242	244	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	242	244	first strand
Strand 2	M	393	396	parallel
Strand 3	M	343	347	anti-parallel
Strand 4	M	277	282	anti-parallel
Strand 5	M	325	330	parallel
Strand 6	M	312	320	anti-parallel
Strand 7	R	307	314	parallel
Strand 8	Q	307	308	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	300	304	first strand
Strand 2	N	300	304	parallel
Strand 3	O	300	304	parallel
Strand 4	P	300	304	parallel
Strand 5	Q	300	304	parallel
Strand 6	R	300	305	parallel
Strand 7	M	300	304	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	307	309	first strand
Strand 2	N	311	315	parallel
Strand 3	O	318	320	parallel
Strand 4	O	325	330	anti-parallel
Strand 5	O	277	282	parallel
Strand 6	O	344	347	anti-parallel
Strand 7	O	393	396	anti-parallel
Strand 8	O	242	244	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	163	168	first strand
Strand 2	O	53	60	anti-parallel
Strand 3	N	21	31	parallel
Strand 4	O	269	270	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	48	first strand
Strand 2	N	352	364	parallel
Strand 3	N	373	386	anti-parallel
Strand 4	N	170	179	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	65	67	first strand
Strand 2	N	140	146	anti-parallel
Strand 3	N	93	97	anti-parallel
Strand 4	N	108	111	anti-parallel
Strand 5	N	120	124	anti-parallel
Strand 6	N	78	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	218	221	first strand
Strand 2	N	227	230	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	307	308	first strand
Strand 2	O	312	314	parallel
Strand 3	P	318	320	parallel
Strand 4	P	325	330	anti-parallel
Strand 5	P	277	282	parallel
Strand 6	P	344	347	anti-parallel
Strand 7	P	393	396	anti-parallel
Strand 8	P	242	244	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	21	29	first strand
Strand 2	P	53	60	parallel
Strand 3	P	163	168	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	45	48	first strand
Strand 2	O	352	364	parallel
Strand 3	O	373	386	anti-parallel
Strand 4	O	170	179	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	65	67	first strand
Strand 2	O	140	146	anti-parallel
Strand 3	O	93	97	anti-parallel
Strand 4	O	108	111	anti-parallel
Strand 5	O	120	124	anti-parallel
Strand 6	O	78	80	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	218	221	first strand
Strand 2	O	227	230	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	307	308	first strand
Strand 2	P	311	314	parallel
Strand 3	Q	318	320	parallel
Strand 4	Q	325	330	anti-parallel
Strand 5	Q	277	282	parallel
Strand 6	Q	343	347	anti-parallel
Strand 7	Q	393	396	anti-parallel
Strand 8	Q	242	244	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	21	29	first strand
Strand 2	Q	53	60	parallel
Strand 3	Q	163	168	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	46	48	first strand
Strand 2	P	352	364	parallel
Strand 3	P	373	386	anti-parallel
Strand 4	P	170	179	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	65	67	first strand
Strand 2	P	140	146	anti-parallel
Strand 3	P	93	97	anti-parallel
Strand 4	P	108	111	anti-parallel
Strand 5	P	120	124	anti-parallel
Strand 6	P	78	80	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	218	221	first strand
Strand 2	P	227	230	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	21	29	first strand
Strand 2	R	53	60	parallel
Strand 3	R	163	168	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	45	48	first strand
Strand 2	Q	352	364	parallel
Strand 3	Q	373	386	anti-parallel
Strand 4	Q	170	179	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	65	67	first strand
Strand 2	Q	140	146	anti-parallel
Strand 3	Q	93	97	anti-parallel
Strand 4	Q	108	111	anti-parallel
Strand 5	Q	120	124	anti-parallel
Strand 6	Q	78	80	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	218	221	first strand
Strand 2	Q	227	230	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	311	313	first strand
Strand 2	R	318	320	parallel
Strand 3	R	325	330	anti-parallel
Strand 4	R	277	282	parallel
Strand 5	R	343	347	anti-parallel
Strand 6	R	393	396	anti-parallel
Strand 7	R	242	244	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	45	48	first strand
Strand 2	R	352	364	parallel
Strand 3	R	373	386	anti-parallel
Strand 4	R	170	179	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	67	first strand
Strand 2	R	140	146	anti-parallel
Strand 3	R	93	97	anti-parallel
Strand 4	R	108	111	anti-parallel
Strand 5	R	120	124	anti-parallel
Strand 6	R	78	80	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	218	221	first strand
Strand 2	R	227	230	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	46	48	first strand
Strand 2	T	352	364	parallel
Strand 3	T	373	386	anti-parallel
Strand 4	T	170	179	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	53	58	first strand
Strand 2	T	163	168	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	65	67	first strand
Strand 2	T	140	146	anti-parallel
Strand 3	T	93	97	anti-parallel
Strand 4	T	108	111	anti-parallel
Strand 5	T	120	127	anti-parallel
Strand 6	T	78	80	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	218	221	first strand
Strand 2	T	227	230	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	242	244	first strand
Strand 2	T	393	396	parallel
Strand 3	T	343	347	anti-parallel
Strand 4	T	277	282	anti-parallel
Strand 5	T	325	330	parallel
Strand 6	T	317	320	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	2	6	first strand
Strand 2	c	103	110	anti-parallel
Strand 3	c	29	36	anti-parallel
Strand 4	c	83	84	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	14	16	first strand
Strand 2	c	90	96	anti-parallel
Strand 3	c	50	56	anti-parallel
Strand 4	c	62	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IN6