Analysis of interatomic Contacts of Structural Units in PDB entry:
9IND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IND entry

There are 4 chains in PDB entry 9IND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	VAL 440
H	GLU 1	SER 119
L	GLU 1	LEU 104
B	ASN 70	ILE 421

There are 18 helices in PDB entry 9IND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	188	194	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	245	250	Right-handed alpha
Helix 5	AA5	A	366	370	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	B	114	116	Right-handed 310
Helix 9	AA9	B	117	123	Right-handed alpha
Helix 10	AB1	B	126	135	Right-handed alpha
Helix 11	AB2	B	161	172	Right-handed alpha
Helix 12	AB3	B	191	202	Right-handed alpha
Helix 13	AB4	B	213	224	Right-handed alpha
Helix 14	AB5	B	224	229	Right-handed alpha
Helix 15	AB6	B	250	256	Right-handed 310
Helix 16	AB7	B	282	293	Right-handed alpha
Helix 17	AB8	B	305	313	Right-handed alpha
Helix 18	AB9	B	330	345	Right-handed alpha

There are 19 sheets in PDB entry 9IND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	421	426	anti-parallel
Strand 4	A	407	412	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	67	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	84	85	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	113	114	anti-parallel
Strand 3	A	123	124	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	182	187	anti-parallel
Strand 4	A	208	209	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	283	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	326	332	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	309	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	376	anti-parallel
Strand 4	A	389	392	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	382	383	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	103	108	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	19	23	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	386	394	anti-parallel
Strand 4	B	357	364	anti-parallel
Strand 5	B	370	372	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	418	420	parallel
Strand 3	B	405	410	anti-parallel
Strand 4	B	348	351	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	139	149	anti-parallel
Strand 3	B	103	112	parallel
Strand 4	B	235	242	parallel
Strand 5	B	295	301	parallel
Strand 6	B	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IND

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IND