Analysis of interatomic Contacts of Structural Units in PDB entry:
9IP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IP2 entry

There are 5 chains in PDB entry 9IP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LYS 1416
B
 MET 113ILE 329
C
 VAL 110GLN 172
D
 ILE 107THR 138
E
 VAL 110VAL 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 91 helices in PDB entry 9IP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
52 54Right-handed 310
Helix 5
AA5
A
55 62Right-handed alpha
Helix 6
AA6
A
72 87Right-handed alpha
Helix 7
AA7
A
88 95Right-handed 310
Helix 8
AA8
A
98 122Right-handed alpha
Helix 9
AA9
A
137 143Right-handed alpha
Helix 10
AB1
A
145 165Right-handed alpha
Helix 11
AB2
A
195 200Right-handed alpha
Helix 12
AB3
A
204 209Right-handed alpha
Helix 13
AB4
A
210 215Right-handed 310
Helix 14
AB5
A
221 225Right-handed 310
Helix 15
AB6
A
237 264Right-handed alpha
Helix 16
AB7
A
272 291Right-handed alpha
Helix 17
AB8
A
293 299Right-handed alpha
Helix 18
AB9
A
300 310Right-handed alpha
Helix 19
AC1
A
316 319Right-handed 310
Helix 20
AC2
A
320 341Right-handed alpha
Helix 21
AC3
A
348 361Right-handed alpha
Helix 22
AC4
A
364 372Right-handed alpha
Helix 23
AC5
A
384 398Right-handed alpha
Helix 24
AC6
A
403 427Right-handed alpha
Helix 25
AC7
A
435 438Right-handed 310
Helix 26
AC8
A
439 448Right-handed alpha
Helix 27
AC9
A
460 466Right-handed 310
Helix 28
AD1
A
493 501Right-handed 310
Helix 29
AD2
A
502 507Right-handed alpha
Helix 30
AD3
A
518 524Right-handed alpha
Helix 31
AD4
A
530 540Right-handed alpha
Helix 32
AD5
A
541 549Right-handed 310
Helix 33
AD6
A
570 587Right-handed alpha
Helix 34
AD7
A
588 592Right-handed 310
Helix 35
AD8
A
599 603Right-handed 310
Helix 36
AD9
A
604 612Right-handed alpha
Helix 37
AE1
A
637 643Right-handed 310
Helix 38
AE2
A
644 660Right-handed alpha
Helix 39
AE3
A
666 672Right-handed alpha
Helix 40
AE4
A
691 695Right-handed 310
Helix 41
AE5
A
715 735Right-handed alpha
Helix 42
AE6
A
760 785Right-handed alpha
Helix 43
AE7
A
791 795Right-handed 310
Helix 44
AE8
A
818 823Right-handed alpha
Helix 45
AE9
A
835 853Right-handed alpha
Helix 46
AF1
A
857 878Right-handed alpha
Helix 47
AF2
A
887 894Right-handed alpha
Helix 48
AF3
A
898 908Right-handed alpha
Helix 49
AF4
A
909 913Right-handed 310
Helix 50
AF5
A
919 924Right-handed 310
Helix 51
AF6
A
930 947Right-handed alpha
Helix 52
AF7
A
948 950Right-handed 310
Helix 53
AF8
A
951 957Right-handed alpha
Helix 54
AF9
A
964 971Right-handed alpha
Helix 55
AG1
A
977 981Right-handed 310
Helix 56
AG2
A
983 999Right-handed alpha
Helix 57
AG3
A
1001 1008Right-handed alpha
Helix 58
AG4
A
1011 1024Right-handed alpha
Helix 59
AG5
A
1031 1039Right-handed alpha
Helix 60
AG6
A
1041 1055Right-handed alpha
Helix 61
AG7
A
1072 1090Right-handed alpha
Helix 62
AG8
A
1096 1104Right-handed alpha
Helix 63
AG9
A
1108 1121Right-handed alpha
Helix 64
AH1
A
1121 1126Right-handed alpha
Helix 65
AH2
A
1137 1141Right-handed alpha
Helix 66
AH3
A
1150 1157Right-handed alpha
Helix 67
AH4
A
1207 1209Right-handed 310
Helix 68
AH5
A
1216 1221Right-handed alpha
Helix 69
AH6
A
1238 1255Right-handed alpha
Helix 70
AH7
A
1260 1270Right-handed alpha
Helix 71
AH8
A
1276 1282Right-handed alpha
Helix 72
AH9
A
1291 1301Right-handed alpha
Helix 73
AI1
A
1313 1315Right-handed 310
Helix 74
AI2
A
1324 1328Right-handed 310
Helix 75
AI3
A
1342 1356Right-handed alpha
Helix 76
AI4
B
114 138Right-handed alpha
Helix 77
AI5
B
144 156Right-handed alpha
Helix 78
AI6
B
167 173Right-handed alpha
Helix 79
AI7
B
183 197Right-handed alpha
Helix 80
AI8
B
209 220Right-handed alpha
Helix 81
AI9
B
226 242Right-handed alpha
Helix 82
AJ1
B
244 258Right-handed alpha
Helix 83
AJ2
B
261 273Right-handed alpha
Helix 84
AJ3
B
274 277Right-handed 310
Helix 85
AJ4
B
293 298Right-handed 310
Helix 86
AJ5
B
308 311Right-handed 310
Helix 87
AJ6
C
111 132Right-handed alpha
Helix 88
AJ7
C
141 156Right-handed alpha
Helix 89
AJ8
C
162 168Right-handed alpha
Helix 90
AJ9
D
108 135Right-handed alpha
Helix 91
AK1
E
111 135Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9IP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
230 236parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
181 184anti-parallel
Strand 5
A
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
C
135 137anti-parallel
Strand 3
B
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 568first strand
Strand 2
A
552 555anti-parallel
Strand 3
A
676 679parallel
Strand 4
A
704 705anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 742first strand
Strand 2
A
746 756anti-parallel
Strand 3
A
625 635anti-parallel
Strand 4
A
797 798anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 803first strand
Strand 2
A
808 810anti-parallel
Strand 3
A
813 814anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1030first strand
Strand 2
A
1129 1131parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1149first strand
Strand 2
A
1367 1373anti-parallel
Strand 3
A
1189 1194anti-parallel
Strand 4
A
1317 1320anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1200 1201first strand
Strand 2
A
1211 1212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
313 318parallel
Strand 3
B
324 328anti-parallel
Strand 4
B
300 302anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il