Analysis of interatomic Contacts of Structural Units in PDB entry:
9IP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IP8 entry

There are 3 chains in PDB entry 9IP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ALA 587
B	GLN 6	THR 497
C	MET 0	VAL 203

There are 22 helices in PDB entry 9IP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	31	Right-handed alpha
Helix 2	AA2	A	328	333	Right-handed alpha
Helix 3	AA3	A	334	336	Right-handed 310
Helix 4	AA4	A	348	354	Right-handed alpha
Helix 5	AA5	A	364	374	Right-handed 310
Helix 6	AA6	A	393	397	Right-handed 310
Helix 7	AA7	A	407	411	Right-handed 310
Helix 8	AA8	A	452	457	Right-handed alpha
Helix 9	AA9	A	471	479	Right-handed alpha
Helix 10	AB1	A	551	555	Right-handed 310
Helix 11	AB2	B	33	37	Right-handed 310
Helix 12	AB3	B	92	96	Right-handed 310
Helix 13	AB4	B	124	128	Right-handed 310
Helix 14	AB5	B	214	218	Right-handed 310
Helix 15	AB6	B	295	299	Right-handed 310
Helix 16	AB7	B	329	332	Right-handed 310
Helix 17	AB8	B	341	343	Right-handed 310
Helix 18	AB9	B	354	358	Right-handed 310
Helix 19	AC1	B	469	473	Right-handed 310
Helix 20	AC2	C	56	58	Right-handed 310
Helix 21	AC3	C	173	178	Right-handed alpha
Helix 22	AC4	C	189	193	Right-handed 310

There are 24 sheets in PDB entry 9IP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	82	83	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	95	96	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	252	253	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	266	268	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	301	304	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	376	377	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	526	first strand
Strand 2	A	531	532	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	566	567	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	97	105	anti-parallel
Strand 5	B	110	114	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	97	105	anti-parallel
Strand 5	B	118	120	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	149	155	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	197	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	219	225	anti-parallel
Strand 4	B	237	239	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	273	first strand
Strand 2	B	285	292	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	335	340	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	379	383	parallel
Strand 3	B	359	361	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	312	314	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	325	327	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	374	375	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	410	420	anti-parallel
Strand 3	B	452	465	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	492	496	parallel
Strand 3	B	474	480	anti-parallel
Strand 4	B	423	428	anti-parallel
Strand 5	B	434	439	anti-parallel
Strand 6	B	443	444	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	492	496	parallel
Strand 3	B	474	480	anti-parallel
Strand 4	B	487	488	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	50	54	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	43	first strand
Strand 2	C	31	35	anti-parallel
Strand 3	C	60	66	anti-parallel
Strand 4	C	75	80	anti-parallel
Strand 5	C	196	201	parallel
Strand 6	C	179	185	anti-parallel
Strand 7	C	142	146	anti-parallel
Strand 8	C	149	151	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	129	133	anti-parallel
Strand 3	C	166	169	anti-parallel
Strand 4	C	160	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IP8