Analysis of interatomic Contacts of Structural Units in PDB entry:
9IQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IQE entry

There are 2 chains in PDB entry 9IQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 572
B
 ARG 13LYS 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9IQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 10Right-handed alpha
Helix 2
AA2
A
13 45Right-handed alpha
Helix 3
AA3
A
50 100Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
110 135Right-handed alpha
Helix 6
AA6
A
137 153Right-handed alpha
Helix 7
AA7
A
158 203Right-handed alpha
Helix 8
AA8
A
203 210Right-handed alpha
Helix 9
AA9
A
212 240Right-handed alpha
Helix 10
AB1
A
241 267Right-handed alpha
Helix 11
AB2
A
270 293Right-handed alpha
Helix 12
AB3
A
296 313Right-handed alpha
Helix 13
AB4
A
373 382Right-handed alpha
Helix 14
AB5
A
403 410Right-handed alpha
Helix 15
AB6
A
425 430Right-handed alpha
Helix 16
AB7
A
437 448Right-handed alpha
Helix 17
AB8
A
450 455Right-handed alpha
Helix 18
AB9
A
459 462Right-handed 310
Helix 19
AC1
A
473 487Right-handed alpha
Helix 20
AC2
A
498 502Right-handed 310
Helix 21
AC3
A
503 519Right-handed alpha
Helix 22
AC4
A
529 533Right-handed 310
Helix 23
AC5
A
552 560Right-handed alpha
Helix 24
AC6
A
560 571Right-handed alpha
Helix 25
AC7
B
17 29Right-handed alpha
Helix 26
AC8
B
32 70Right-handed alpha
Helix 27
AC9
B
77 88Right-handed alpha
Helix 28
AD1
B
90 98Right-handed alpha
Helix 29
AD2
B
109 158Right-handed alpha
Helix 30
AD3
B
161 168Right-handed alpha
Helix 31
AD4
B
171 178Right-handed alpha
Helix 32
AD5
B
178 213Right-handed alpha
Helix 33
AD6
B
213 222Right-handed alpha
Helix 34
AD7
B
222 262Right-handed alpha
Helix 35
AD8
B
262 268Right-handed alpha
Helix 36
AD9
B
271 299Right-handed alpha
Helix 37
AE1
B
299 325Right-handed alpha
Helix 38
AE2
B
329 372Right-handed alpha
Helix 39
AE3
B
429 438Right-handed alpha
Helix 40
AE4
B
456 458Right-handed 310
Helix 41
AE5
B
459 468Right-handed alpha
Helix 42
AE6
B
480 487Right-handed alpha
Helix 43
AE7
B
493 504Right-handed alpha
Helix 44
AE8
B
506 511Right-handed alpha
Helix 45
AE9
B
529 544Right-handed alpha
Helix 46
AF1
B
559 572Right-handed alpha
Helix 47
AF2
B
585 590Right-handed alpha
Helix 48
AF3
B
608 615Right-handed alpha
Helix 49
AF4
B
617 627Right-handed alpha
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There are 5 sheets in PDB entry 9IQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
334 341anti-parallel
Strand 3
A
389 394anti-parallel
Strand 4
A
397 398anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
492 496parallel
Strand 3
A
522 527parallel
Strand 4
A
363 368parallel
Strand 5
A
538 543parallel
Strand 6
A
546 551anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 413first strand
Strand 2
B
391 396anti-parallel
Strand 3
B
447 450anti-parallel
Strand 4
B
453 454anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
548 552parallel
Strand 3
B
578 582parallel
Strand 4
B
421 423parallel
Strand 5
B
595 599parallel
Strand 6
B
602 607anti-parallel
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