Analysis of interatomic Contacts of Structural Units in PDB entry:
9IQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IQF entry

There are 2 chains in PDB entry 9IQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 572
B
 ARG 13LYS 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9IQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 10Right-handed alpha
Helix 2
AA2
A
13 49Right-handed alpha
Helix 3
AA3
A
50 100Right-handed alpha
Helix 4
AA4
A
102 110Right-handed alpha
Helix 5
AA5
A
110 120Right-handed alpha
Helix 6
AA6
A
120 135Right-handed alpha
Helix 7
AA7
A
137 154Right-handed alpha
Helix 8
AA8
A
157 204Right-handed alpha
Helix 9
AA9
A
204 211Right-handed alpha
Helix 10
AB1
A
212 266Right-handed alpha
Helix 11
AB2
A
271 295Right-handed alpha
Helix 12
AB3
A
297 314Right-handed alpha
Helix 13
AB4
A
373 382Right-handed alpha
Helix 14
AB5
A
400 402Right-handed 310
Helix 15
AB6
A
403 410Right-handed alpha
Helix 16
AB7
A
425 429Right-handed alpha
Helix 17
AB8
A
430 433Right-handed 310
Helix 18
AB9
A
437 448Right-handed alpha
Helix 19
AC1
A
450 457Right-handed alpha
Helix 20
AC2
A
466 470Right-handed 310
Helix 21
AC3
A
474 488Right-handed alpha
Helix 22
AC4
A
498 502Right-handed 310
Helix 23
AC5
A
503 518Right-handed alpha
Helix 24
AC6
A
529 533Right-handed 310
Helix 25
AC7
A
552 560Right-handed alpha
Helix 26
AC8
A
560 571Right-handed alpha
Helix 27
AC9
B
17 27Right-handed alpha
Helix 28
AD1
B
28 31Right-handed 310
Helix 29
AD2
B
32 69Right-handed alpha
Helix 30
AD3
B
77 88Right-handed alpha
Helix 31
AD4
B
90 100Right-handed alpha
Helix 32
AD5
B
109 160Right-handed alpha
Helix 33
AD6
B
161 167Right-handed alpha
Helix 34
AD7
B
169 178Right-handed alpha
Helix 35
AD8
B
178 213Right-handed alpha
Helix 36
AD9
B
213 222Right-handed alpha
Helix 37
AE1
B
222 262Right-handed alpha
Helix 38
AE2
B
262 268Right-handed alpha
Helix 39
AE3
B
271 299Right-handed alpha
Helix 40
AE4
B
299 326Right-handed alpha
Helix 41
AE5
B
329 348Right-handed alpha
Helix 42
AE6
B
349 372Right-handed alpha
Helix 43
AE7
B
429 438Right-handed alpha
Helix 44
AE8
B
456 458Right-handed 310
Helix 45
AE9
B
459 468Right-handed alpha
Helix 46
AF1
B
480 487Right-handed alpha
Helix 47
AF2
B
493 504Right-handed alpha
Helix 48
AF3
B
506 511Right-handed alpha
Helix 49
AF4
B
529 544Right-handed alpha
Helix 50
AF5
B
559 571Right-handed alpha
Helix 51
AF6
B
585 589Right-handed 310
Helix 52
AF7
B
608 615Right-handed alpha
Helix 53
AF8
B
617 629Right-handed alpha
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There are 5 sheets in PDB entry 9IQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 356first strand
Strand 2
A
335 341anti-parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
397 398anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
492 496parallel
Strand 3
A
522 527parallel
Strand 4
A
363 367parallel
Strand 5
A
538 543parallel
Strand 6
A
546 551anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
391 394anti-parallel
Strand 3
B
447 450anti-parallel
Strand 4
B
453 454anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
548 552parallel
Strand 3
B
578 582parallel
Strand 4
B
421 423parallel
Strand 5
B
595 598parallel
Strand 6
B
603 607anti-parallel
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