Analysis of interatomic Contacts of Structural Units in PDB entry:
9IRI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IRI entry

There are 11 chains in PDB entry 9IRI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 8	LYS 335
B	MET 1	PHE 184
C	THR 6	GLU 337
D	THR 6	GLU 337
E	LEU 8	GLU 337
F	THR 6	GLU 337
G	THR 7	GLU 337
I	LEU 8	GLU 337
J	LEU 8	GLU 334
K	VAL 13	PHE 332
M	C 1	C 70

There are 96 helices in PDB entry 9IRI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	63	73	Right-handed alpha
Helix 3	AA3	A	111	129	Right-handed alpha
Helix 4	AA4	A	133	145	Right-handed alpha
Helix 5	AA5	A	187	202	Right-handed alpha
Helix 6	AA6	A	252	261	Right-handed alpha
Helix 7	AA7	A	269	274	Right-handed alpha
Helix 8	AA8	A	300	304	Right-handed 310
Helix 9	AA9	A	318	329	Right-handed alpha
Helix 10	AB1	B	16	35	Right-handed alpha
Helix 11	AB2	B	60	68	Right-handed alpha
Helix 12	AB3	B	105	117	Right-handed alpha
Helix 13	AB4	B	129	133	Right-handed 310
Helix 14	AB5	C	57	63	Right-handed alpha
Helix 15	AB6	C	63	72	Right-handed alpha
Helix 16	AB7	C	111	129	Right-handed alpha
Helix 17	AB8	C	131	145	Right-handed alpha
Helix 18	AB9	C	148	153	Right-handed alpha
Helix 19	AC1	C	189	201	Right-handed alpha
Helix 20	AC2	C	231	236	Right-handed alpha
Helix 21	AC3	C	252	260	Right-handed alpha
Helix 22	AC4	C	269	273	Right-handed 310
Helix 23	AC5	C	299	309	Right-handed alpha
Helix 24	AC6	C	315	329	Right-handed alpha
Helix 25	AC7	D	57	63	Right-handed alpha
Helix 26	AC8	D	63	73	Right-handed alpha
Helix 27	AC9	D	111	129	Right-handed alpha
Helix 28	AD1	D	137	145	Right-handed alpha
Helix 29	AD2	D	186	188	Right-handed 310
Helix 30	AD3	D	189	202	Right-handed alpha
Helix 31	AD4	D	232	236	Right-handed 310
Helix 32	AD5	D	252	258	Right-handed alpha
Helix 33	AD6	D	269	274	Right-handed alpha
Helix 34	AD7	D	299	308	Right-handed alpha
Helix 35	AD8	D	318	329	Right-handed alpha
Helix 36	AD9	E	57	63	Right-handed alpha
Helix 37	AE1	E	63	73	Right-handed alpha
Helix 38	AE2	E	111	128	Right-handed alpha
Helix 39	AE3	E	131	139	Right-handed alpha
Helix 40	AE4	E	187	200	Right-handed alpha
Helix 41	AE5	E	252	261	Right-handed alpha
Helix 42	AE6	E	269	274	Right-handed alpha
Helix 43	AE7	E	293	297	Right-handed 310
Helix 44	AE8	E	299	309	Right-handed alpha
Helix 45	AE9	E	318	329	Right-handed alpha
Helix 46	AF1	F	58	62	Right-handed 310
Helix 47	AF2	F	63	71	Right-handed alpha
Helix 48	AF3	F	112	129	Right-handed alpha
Helix 49	AF4	F	131	145	Right-handed alpha
Helix 50	AF5	F	173	177	Right-handed 310
Helix 51	AF6	F	187	201	Right-handed alpha
Helix 52	AF7	F	252	261	Right-handed alpha
Helix 53	AF8	F	269	274	Right-handed alpha
Helix 54	AF9	F	299	309	Right-handed alpha
Helix 55	AG1	F	317	329	Right-handed alpha
Helix 56	AG2	G	57	62	Right-handed alpha
Helix 57	AG3	G	63	72	Right-handed alpha
Helix 58	AG4	G	111	126	Right-handed alpha
Helix 59	AG5	G	133	145	Right-handed alpha
Helix 60	AG6	G	188	202	Right-handed alpha
Helix 61	AG7	G	252	261	Right-handed alpha
Helix 62	AG8	G	299	309	Right-handed alpha
Helix 63	AG9	G	317	329	Right-handed alpha
Helix 64	AH1	I	57	62	Right-handed alpha
Helix 65	AH2	I	63	69	Right-handed alpha
Helix 66	AH3	I	70	73	Right-handed 310
Helix 67	AH4	I	112	129	Right-handed alpha
Helix 68	AH5	I	134	145	Right-handed alpha
Helix 69	AH6	I	173	177	Right-handed 310
Helix 70	AH7	I	187	200	Right-handed alpha
Helix 71	AH8	I	252	260	Right-handed alpha
Helix 72	AH9	I	269	274	Right-handed alpha
Helix 73	AI1	I	293	297	Right-handed 310
Helix 74	AI2	I	299	309	Right-handed alpha
Helix 75	AI3	I	318	329	Right-handed alpha
Helix 76	AI4	J	57	62	Right-handed alpha
Helix 77	AI5	J	63	71	Right-handed alpha
Helix 78	AI6	J	111	129	Right-handed alpha
Helix 79	AI7	J	139	145	Right-handed alpha
Helix 80	AI8	J	173	177	Right-handed 310
Helix 81	AI9	J	187	200	Right-handed alpha
Helix 82	AJ1	J	231	236	Right-handed alpha
Helix 83	AJ2	J	252	261	Right-handed alpha
Helix 84	AJ3	J	269	274	Right-handed alpha
Helix 85	AJ4	J	299	307	Right-handed alpha
Helix 86	AJ5	J	315	329	Right-handed alpha
Helix 87	AJ6	K	57	63	Right-handed alpha
Helix 88	AJ7	K	63	69	Right-handed alpha
Helix 89	AJ8	K	111	129	Right-handed alpha
Helix 90	AJ9	K	133	145	Right-handed alpha
Helix 91	AK1	K	187	202	Right-handed alpha
Helix 92	AK2	K	252	260	Right-handed alpha
Helix 93	AK3	K	267	271	Right-handed 310
Helix 94	AK4	K	299	304	Right-handed alpha
Helix 95	AK5	K	304	309	Right-handed alpha
Helix 96	AK6	K	318	329	Right-handed alpha

There are 53 sheets in PDB entry 9IRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	14	16	anti-parallel
Strand 3	A	330	331	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	90	99	anti-parallel
Strand 3	A	25	30	anti-parallel
Strand 4	A	206	214	first strand
Strand 5	A	158	164	anti-parallel
Strand 6	A	169	171	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	90	99	anti-parallel
Strand 4	A	250	251	first strand

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	75	81	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	289	290	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	80	82	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	86	87	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	181	183	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	140	144	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	108	109	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	90	99	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	158	164	anti-parallel
Strand 5	C	170	173	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	248	251	anti-parallel
Strand 3	C	244	245	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	77	81	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	289	290	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	25	30	anti-parallel
Strand 4	D	207	215	first strand
Strand 5	D	157	164	anti-parallel
Strand 6	D	168	173	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	25	30	anti-parallel
Strand 3	D	90	99	anti-parallel
Strand 4	D	248	251	first strand
Strand 5	D	244	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	50	first strand
Strand 2	D	75	81	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	241	242	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	276	277	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	14	16	anti-parallel
Strand 3	E	330	331	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	98	99	anti-parallel
Strand 3	E	206	207	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	90	95	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	158	163	anti-parallel
Strand 6	E	169	173	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	50	first strand
Strand 2	E	75	81	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	284	first strand
Strand 2	E	289	290	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	108	109	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	90	99	anti-parallel
Strand 3	F	25	30	anti-parallel
Strand 4	F	206	215	first strand
Strand 5	F	157	164	anti-parallel
Strand 6	F	170	171	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	40	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	90	99	anti-parallel
Strand 4	F	248	251	first strand
Strand 5	F	244	245	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	50	first strand
Strand 2	F	75	79	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	264	first strand
Strand 2	F	276	277	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	284	first strand
Strand 2	F	289	290	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	109	first strand
Strand 2	G	14	16	anti-parallel
Strand 3	G	330	331	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	97	99	anti-parallel
Strand 3	G	206	215	anti-parallel
Strand 4	G	90	95	anti-parallel
Strand 5	G	27	30	anti-parallel
Strand 6	G	39	40	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	97	99	anti-parallel
Strand 3	G	206	215	anti-parallel
Strand 4	G	158	164	anti-parallel
Strand 5	G	170	171	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	50	first strand
Strand 2	G	75	81	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	284	first strand
Strand 2	G	289	290	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	109	first strand
Strand 2	I	14	16	anti-parallel
Strand 3	I	330	331	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	22	first strand
Strand 2	I	91	99	anti-parallel
Strand 3	I	25	29	anti-parallel
Strand 4	I	206	214	first strand
Strand 5	I	158	164	anti-parallel
Strand 6	I	169	171	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	40	first strand
Strand 2	I	25	29	anti-parallel
Strand 3	I	91	99	anti-parallel
Strand 4	I	248	251	first strand
Strand 5	I	244	245	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	50	first strand
Strand 2	I	75	81	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	262	264	first strand
Strand 2	I	276	277	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	108	109	first strand
Strand 2	J	14	16	anti-parallel
Strand 3	J	330	331	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	22	first strand
Strand 2	J	97	99	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	40	first strand
Strand 2	J	26	30	anti-parallel
Strand 3	J	90	95	anti-parallel
Strand 4	J	210	215	anti-parallel
Strand 5	J	157	159	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	50	first strand
Strand 2	J	75	82	anti-parallel
Strand 3	J	238	240	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	161	163	first strand
Strand 2	J	169	171	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	245	first strand
Strand 2	J	248	249	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	262	264	first strand
Strand 2	J	276	277	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	15	first strand
Strand 2	K	108	109	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	22	first strand
Strand 2	K	90	99	anti-parallel
Strand 3	K	26	30	anti-parallel
Strand 4	K	39	40	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	22	first strand
Strand 2	K	90	99	anti-parallel
Strand 3	K	206	215	anti-parallel
Strand 4	K	157	163	anti-parallel
Strand 5	K	169	172	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	50	first strand
Strand 2	K	75	81	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	244	245	first strand
Strand 2	K	248	249	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	283	284	first strand
Strand 2	K	289	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IRI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IRI