Analysis of interatomic Contacts of Structural Units in PDB entry:
9IS6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IS6 entry

There are 8 chains in PDB entry 9IS6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 227	ALA 435
H	MET 1	HIS 197
G	MET 1	SER 221
F	MET 1	SER 308
E	THR 28	GLN 340
C	VAL 5	GLY 408
D	GLU 92	MET 393
B	ASN 341	CYS 439

There are 93 helices in PDB entry 9IS6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	231	240	Right-handed alpha
Helix 2	AA2	A	255	260	Right-handed alpha
Helix 3	AA3	A	262	270	Right-handed alpha
Helix 4	AA4	A	271	280	Right-handed alpha
Helix 5	AA5	A	282	292	Right-handed alpha
Helix 6	AA6	A	292	304	Right-handed alpha
Helix 7	AA7	A	306	322	Right-handed alpha
Helix 8	AA8	A	325	330	Right-handed alpha
Helix 9	AA9	A	331	348	Right-handed alpha
Helix 10	AB1	A	355	363	Right-handed alpha
Helix 11	AB2	A	365	379	Right-handed alpha
Helix 12	AB3	A	400	435	Right-handed alpha
Helix 13	AB4	H	3	12	Right-handed alpha
Helix 14	AB5	H	17	33	Right-handed alpha
Helix 15	AB6	H	41	52	Right-handed alpha
Helix 16	AB7	H	54	64	Right-handed alpha
Helix 17	AB8	H	66	73	Right-handed alpha
Helix 18	AB9	H	73	88	Right-handed alpha
Helix 19	AC1	H	92	99	Right-handed alpha
Helix 20	AC2	H	111	129	Right-handed alpha
Helix 21	AC3	H	135	143	Right-handed alpha
Helix 22	AC4	H	145	156	Right-handed alpha
Helix 23	AC5	H	184	196	Right-handed alpha
Helix 24	AC6	G	2	19	Right-handed alpha
Helix 25	AC7	G	25	36	Right-handed alpha
Helix 26	AC8	G	42	48	Right-handed alpha
Helix 27	AC9	G	49	55	Right-handed alpha
Helix 28	AD1	G	59	71	Right-handed alpha
Helix 29	AD2	G	73	80	Right-handed alpha
Helix 30	AD3	G	88	106	Right-handed alpha
Helix 31	AD4	G	112	120	Right-handed alpha
Helix 32	AD5	G	123	135	Right-handed alpha
Helix 33	AD6	G	166	220	Right-handed alpha
Helix 34	AD7	F	14	33	Right-handed alpha
Helix 35	AD8	F	89	104	Right-handed alpha
Helix 36	AD9	F	120	131	Right-handed alpha
Helix 37	AE1	F	183	195	Right-handed alpha
Helix 38	AE2	F	207	239	Right-handed alpha
Helix 39	AE3	F	244	256	Right-handed alpha
Helix 40	AE4	F	263	304	Right-handed alpha
Helix 41	AE5	E	36	47	Right-handed alpha
Helix 42	AE6	E	63	75	Right-handed alpha
Helix 43	AE7	E	112	116	Right-handed 310
Helix 44	AE8	E	117	129	Right-handed alpha
Helix 45	AE9	E	152	166	Right-handed alpha
Helix 46	AF1	E	175	182	Right-handed alpha
Helix 47	AF2	E	214	221	Right-handed alpha
Helix 48	AF3	E	235	247	Right-handed alpha
Helix 49	AF4	E	249	255	Right-handed alpha
Helix 50	AF5	E	264	288	Right-handed alpha
Helix 51	AF6	E	307	336	Right-handed alpha
Helix 52	AF7	C	6	16	Right-handed alpha
Helix 53	AF8	C	23	34	Right-handed alpha
Helix 54	AF9	C	59	70	Right-handed alpha
Helix 55	AG1	C	76	92	Right-handed alpha
Helix 56	AG2	C	94	100	Right-handed alpha
Helix 57	AG3	C	102	120	Right-handed alpha
Helix 58	AG4	C	121	124	Right-handed 310
Helix 59	AG5	C	125	137	Right-handed alpha
Helix 60	AG6	C	146	157	Right-handed alpha
Helix 61	AG7	C	159	164	Right-handed alpha
Helix 62	AG8	C	176	194	Right-handed alpha
Helix 63	AG9	C	196	209	Right-handed alpha
Helix 64	AH1	C	216	234	Right-handed alpha
Helix 65	AH2	C	246	252	Right-handed alpha
Helix 66	AH3	C	257	270	Right-handed alpha
Helix 67	AH4	C	271	282	Right-handed alpha
Helix 68	AH5	C	282	289	Right-handed alpha
Helix 69	AH6	C	291	300	Right-handed alpha
Helix 70	AH7	C	300	312	Right-handed alpha
Helix 71	AH8	C	319	327	Right-handed alpha
Helix 72	AH9	C	330	345	Right-handed alpha
Helix 73	AI1	C	369	399	Right-handed alpha
Helix 74	AI2	C	400	408	Right-handed alpha
Helix 75	AI3	D	93	109	Right-handed alpha
Helix 76	AI4	D	111	121	Right-handed alpha
Helix 77	AI5	D	135	150	Right-handed alpha
Helix 78	AI6	D	156	165	Right-handed alpha
Helix 79	AI7	D	174	190	Right-handed alpha
Helix 80	AI8	D	192	203	Right-handed alpha
Helix 81	AI9	D	204	208	Right-handed 310
Helix 82	AJ1	D	218	235	Right-handed alpha
Helix 83	AJ2	D	238	250	Right-handed alpha
Helix 84	AJ3	D	259	268	Right-handed alpha
Helix 85	AJ4	D	273	284	Right-handed alpha
Helix 86	AJ5	D	298	315	Right-handed alpha
Helix 87	AJ6	D	321	326	Right-handed alpha
Helix 88	AJ7	D	330	344	Right-handed alpha
Helix 89	AJ8	D	365	392	Right-handed alpha
Helix 90	AJ9	B	342	359	Right-handed alpha
Helix 91	AK1	B	367	375	Right-handed alpha
Helix 92	AK2	B	377	391	Right-handed alpha
Helix 93	AK3	B	414	436	Right-handed alpha

There are 10 sheets in PDB entry 9IS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	384	387	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	161	first strand
Strand 2	H	166	168	anti-parallel
Strand 3	H	130	134	anti-parallel
Strand 4	C	349	352	parallel
Strand 5	C	357	360	anti-parallel
Strand 6	C	316	318	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	111	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	67	first strand
Strand 2	F	70	72	anti-parallel
Strand 3	F	10	13	parallel
Strand 4	F	178	180	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	78	first strand
Strand 2	F	59	64	anti-parallel
Strand 3	F	108	115	anti-parallel
Strand 4	F	138	142	parallel
Strand 5	F	155	159	anti-parallel
Strand 6	F	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	82	first strand
Strand 2	F	87	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	230	233	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	101	first strand
Strand 2	E	82	86	anti-parallel
Strand 3	E	137	143	anti-parallel
Strand 4	E	171	174	parallel
Strand 5	E	189	192	anti-parallel
Strand 6	E	225	227	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	357	359	anti-parallel
Strand 3	D	350	352	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	404	406	anti-parallel
Strand 3	B	397	399	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IS6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IS6