Analysis of interatomic Contacts of Structural Units in PDB entry:
9ISE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ISE entry

There are 4 chains in PDB entry 9ISE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLU 296
B
 PRO 3GLU 296
C
 ALA 2GLU 296
D
 PRO 3GLU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9ISE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 31Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
110 117Right-handed alpha
Helix 5
AA5
A
118 123Right-handed 310
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
146 159Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
201 207Right-handed alpha
Helix 10
AB1
A
223 227Right-handed 310
Helix 11
AB2
A
257 265Right-handed alpha
Helix 12
AB3
A
274 296Right-handed alpha
Helix 13
AB4
B
8 29Right-handed alpha
Helix 14
AB5
B
46 64Right-handed alpha
Helix 15
AB6
B
77 91Right-handed alpha
Helix 16
AB7
B
110 116Right-handed alpha
Helix 17
AB8
B
117 118Right-handed 310
Helix 18
AB9
B
119 123Right-handed 310
Helix 19
AC1
B
128 137Right-handed alpha
Helix 20
AC2
B
138 143Right-handed 310
Helix 21
AC3
B
146 159Right-handed alpha
Helix 22
AC4
B
177 188Right-handed alpha
Helix 23
AC5
B
201 207Right-handed alpha
Helix 24
AC6
B
223 227Right-handed 310
Helix 25
AC7
B
257 263Right-handed alpha
Helix 26
AC8
B
274 296Right-handed alpha
Helix 27
AC9
C
8 31Right-handed alpha
Helix 28
AD1
C
46 64Right-handed alpha
Helix 29
AD2
C
77 91Right-handed alpha
Helix 30
AD3
C
110 116Right-handed alpha
Helix 31
AD4
C
117 118Right-handed 310
Helix 32
AD5
C
119 123Right-handed 310
Helix 33
AD6
C
128 137Right-handed alpha
Helix 34
AD7
C
146 159Right-handed alpha
Helix 35
AD8
C
177 188Right-handed alpha
Helix 36
AD9
C
201 207Right-handed alpha
Helix 37
AE1
C
223 227Right-handed 310
Helix 38
AE2
C
257 262Right-handed alpha
Helix 39
AE3
C
274 296Right-handed alpha
Helix 40
AE4
D
8 31Right-handed alpha
Helix 41
AE5
D
46 64Right-handed alpha
Helix 42
AE6
D
77 91Right-handed alpha
Helix 43
AE7
D
110 116Right-handed alpha
Helix 44
AE8
D
117 118Right-handed 310
Helix 45
AE9
D
119 123Right-handed 310
Helix 46
AF1
D
128 137Right-handed alpha
Helix 47
AF2
D
146 159Right-handed alpha
Helix 48
AF3
D
177 187Right-handed alpha
Helix 49
AF4
D
201 208Right-handed alpha
Helix 50
AF5
D
223 227Right-handed 310
Helix 51
AF6
D
257 263Right-handed alpha
Helix 52
AF7
D
274 296Right-handed alpha
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There are 8 sheets in PDB entry 9ISE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
267 268parallel
Strand 3
A
232 235parallel
Strand 4
A
211 214parallel
Strand 5
A
167 171parallel
Strand 6
A
191 195parallel
Strand 7
B
191 195anti-parallel
Strand 8
B
167 171parallel
Strand 9
B
211 214parallel
Strand 10
B
232 235parallel
Strand 11
B
267 268parallel
Strand 12
B
5 6parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
37 43parallel
Strand 3
A
96 99parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
37 43parallel
Strand 3
B
96 99parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
252 253anti-parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
267 268parallel
Strand 3
C
232 235parallel
Strand 4
C
211 214parallel
Strand 5
C
167 171parallel
Strand 6
C
191 195parallel
Strand 7
D
191 195anti-parallel
Strand 8
D
167 171parallel
Strand 9
D
211 214parallel
Strand 10
D
232 235parallel
Strand 11
D
267 268parallel
Strand 12
D
5 6parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 72first strand
Strand 2
C
37 43parallel
Strand 3
C
96 99parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
C
251 253anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 72first strand
Strand 2
D
37 43parallel
Strand 3
D
96 99parallel
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