Analysis of interatomic Contacts of Structural Units in PDB entry:
9ISQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ISQ entry

There are 4 chains in PDB entry 9ISQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 5ALA 881
B
GLY 5ALA 881
C
GLY 5ALA 881
D
GLY 5ALA 881
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are141 helices in PDB entry 9ISQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
81 93Right-handed alpha
Helix 5
AA5
A
106 118Right-handed alpha
Helix 6
AA6
A
132 135Right-handed 310
Helix 7
AA7
A
156 171Right-handed alpha
Helix 8
AA8
A
187 198Right-handed alpha
Helix 9
AA9
A
213 225Right-handed alpha
Helix 10
AB1
A
238 246Right-handed alpha
Helix 11
AB2
A
251 263Right-handed alpha
Helix 12
AB3
A
270 281Right-handed alpha
Helix 13
AB4
A
297 311Right-handed alpha
Helix 14
AB5
A
319 327Right-handed alpha
Helix 15
AB6
A
333 338Right-handed 310
Helix 16
AB7
A
347 360Right-handed alpha
Helix 17
AB8
A
378 393Right-handed alpha
Helix 18
AB9
A
395 399Right-handed 310
Helix 19
AC1
A
411 422Right-handed alpha
Helix 20
AC2
A
431 449Right-handed alpha
Helix 21
AC3
A
461 476Right-handed alpha
Helix 22
AC4
A
482 493Right-handed alpha
Helix 23
AC5
A
505 517Right-handed alpha
Helix 24
AC6
A
531 535Right-handed 310
Helix 25
AC7
A
544 563Right-handed alpha
Helix 26
AC8
A
578 582Right-handed 310
Helix 27
AC9
A
609 614Right-handed alpha
Helix 28
AD1
A
622 636Right-handed alpha
Helix 29
AD2
A
649 667Right-handed alpha
Helix 30
AD3
A
711 715Right-handed 310
Helix 31
AD4
A
732 734Right-handed 310
Helix 32
AD5
A
735 743Right-handed alpha
Helix 33
AD6
A
748 750Right-handed 310
Helix 34
AD7
A
763 772Right-handed alpha
Helix 35
AD8
A
822 839Right-handed alpha
Helix 36
AD9
A
851 862Right-handed alpha
Helix 37
AE1
B
6 11Right-handed alpha
Helix 38
AE2
B
26 37Right-handed alpha
Helix 39
AE3
B
62 66Right-handed 310
Helix 40
AE4
B
81 93Right-handed alpha
Helix 41
AE5
B
106 118Right-handed alpha
Helix 42
AE6
B
132 135Right-handed 310
Helix 43
AE7
B
156 171Right-handed alpha
Helix 44
AE8
B
187 198Right-handed alpha
Helix 45
AE9
B
213 225Right-handed alpha
Helix 46
AF1
B
238 246Right-handed alpha
Helix 47
AF2
B
251 263Right-handed alpha
Helix 48
AF3
B
272 281Right-handed alpha
Helix 49
AF4
B
297 311Right-handed alpha
Helix 50
AF5
B
319 327Right-handed alpha
Helix 51
AF6
B
333 338Right-handed 310
Helix 52
AF7
B
347 361Right-handed alpha
Helix 53
AF8
B
378 393Right-handed alpha
Helix 54
AF9
B
395 399Right-handed 310
Helix 55
AG1
B
411 422Right-handed alpha
Helix 56
AG2
B
431 450Right-handed alpha
Helix 57
AG3
B
460 462Right-handed 310
Helix 58
AG4
B
463 476Right-handed alpha
Helix 59
AG5
B
482 493Right-handed alpha
Helix 60
AG6
B
505 517Right-handed alpha
Helix 61
AG7
B
531 536Right-handed alpha
Helix 62
AG8
B
544 563Right-handed alpha
Helix 63
AG9
B
609 614Right-handed alpha
Helix 64
AH1
B
622 636Right-handed alpha
Helix 65
AH2
B
649 667Right-handed alpha
Helix 66
AH3
B
711 715Right-handed 310
Helix 67
AH4
B
732 734Right-handed 310
Helix 68
AH5
B
735 745Right-handed alpha
Helix 69
AH6
B
748 750Right-handed 310
Helix 70
AH7
B
763 772Right-handed alpha
Helix 71
AH8
B
822 839Right-handed alpha
Helix 72
AH9
B
851 862Right-handed alpha
Helix 73
AI1
C
6 11Right-handed alpha
Helix 74
AI2
C
26 37Right-handed alpha
Helix 75
AI3
C
62 66Right-handed 310
Helix 76
AI4
C
81 93Right-handed alpha
Helix 77
AI5
C
106 118Right-handed alpha
Helix 78
AI6
C
132 135Right-handed 310
Helix 79
AI7
C
156 171Right-handed alpha
Helix 80
AI8
C
187 198Right-handed alpha
Helix 81
AI9
C
213 225Right-handed alpha
Helix 82
AJ1
C
238 246Right-handed alpha
Helix 83
AJ2
C
251 263Right-handed alpha
Helix 84
AJ3
C
272 281Right-handed alpha
Helix 85
AJ4
C
297 311Right-handed alpha
Helix 86
AJ5
C
319 327Right-handed alpha
Helix 87
AJ6
C
333 338Right-handed 310
Helix 88
AJ7
C
347 360Right-handed alpha
Helix 89
AJ8
C
378 393Right-handed alpha
Helix 90
AJ9
C
394 399Right-handed 310
Helix 91
AK1
C
411 422Right-handed alpha
Helix 92
AK2
C
431 448Right-handed alpha
Helix 93
AK3
C
462 476Right-handed alpha
Helix 94
AK4
C
482 493Right-handed alpha
Helix 95
AK5
C
505 517Right-handed alpha
Helix 96
AK6
C
544 563Right-handed alpha
Helix 97
AK7
C
609 614Right-handed alpha
Helix 98
AK8
C
622 636Right-handed alpha
Helix 99
AK9
C
649 667Right-handed alpha
Helix 100
AL1
C
711 715Right-handed 310
Helix 101
AL2
C
732 734Right-handed 310
Helix 102
AL3
C
735 745Right-handed alpha
Helix 103
AL4
C
748 750Right-handed 310
Helix 104
AL5
C
763 772Right-handed alpha
Helix 105
AL6
C
822 839Right-handed alpha
Helix 106
AL7
C
851 862Right-handed alpha
Helix 107
AL8
D
6 11Right-handed alpha
Helix 108
AL9
D
26 37Right-handed alpha
Helix 109
AM1
D
62 66Right-handed 310
Helix 110
AM2
D
81 93Right-handed alpha
Helix 111
AM3
D
106 118Right-handed alpha
Helix 112
AM4
D
132 135Right-handed 310
Helix 113
AM5
D
156 171Right-handed alpha
Helix 114
AM6
D
187 198Right-handed alpha
Helix 115
AM7
D
213 225Right-handed alpha
Helix 116
AM8
D
238 246Right-handed alpha
Helix 117
AM9
D
251 263Right-handed alpha
Helix 118
AN1
D
272 281Right-handed alpha
Helix 119
AN2
D
298 311Right-handed alpha
Helix 120
AN3
D
319 327Right-handed alpha
Helix 121
AN4
D
333 338Right-handed 310
Helix 122
AN5
D
347 361Right-handed alpha
Helix 123
AN6
D
378 393Right-handed alpha
Helix 124
AN7
D
394 399Right-handed 310
Helix 125
AN8
D
408 410Right-handed 310
Helix 126
AN9
D
411 422Right-handed alpha
Helix 127
AO1
D
431 448Right-handed alpha
Helix 128
AO2
D
460 476Right-handed alpha
Helix 129
AO3
D
482 493Right-handed alpha
Helix 130
AO4
D
505 517Right-handed alpha
Helix 131
AO5
D
544 563Right-handed alpha
Helix 132
AO6
D
609 614Right-handed alpha
Helix 133
AO7
D
622 636Right-handed alpha
Helix 134
AO8
D
649 667Right-handed alpha
Helix 135
AO9
D
711 715Right-handed 310
Helix 136
AP1
D
732 734Right-handed 310
Helix 137
AP2
D
735 745Right-handed alpha
Helix 138
AP3
D
748 750Right-handed 310
Helix 139
AP4
D
763 772Right-handed alpha
Helix 140
AP5
D
822 839Right-handed alpha
Helix 141
AP6
D
851 862Right-handed alpha
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There are 42 sheets in PDB entry 9ISQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 47first strand
Strand 2
A
15 18parallel
Strand 3
A
72 75parallel
Strand 4
A
96 99parallel
Strand 5
A
120 122parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 54first strand
Strand 2
A
57 58anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 139first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
174 179anti-parallel
Strand 4
A
147 154parallel
Strand 5
A
203 206parallel
Strand 6
A
230 232parallel
Strand 7
A
265 266parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
340 341first strand
Strand 2
A
291 294parallel
Strand 3
A
366 371parallel
Strand 4
A
400 405parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
480 481first strand
Strand 2
A
690 694anti-parallel
Strand 3
A
670 681anti-parallel
Strand 4
A
583 592anti-parallel
Strand 5
A
596 602anti-parallel
Strand 6
A
615 617anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
480 481first strand
Strand 2
A
690 694anti-parallel
Strand 3
A
670 681anti-parallel
Strand 4
A
684 687anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
501 503first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
520 523anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
716 719first strand
Strand 2
A
725 730anti-parallel
Strand 3
A
778 787anti-parallel
Strand 4
A
790 801anti-parallel
Strand 5
A
808 814anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
752 755first strand
Strand 2
A
758 761anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
842 847first strand
Strand 2
A
873 879anti-parallel
Strand 3
A
865 868anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 47first strand
Strand 2
B
15 18parallel
Strand 3
B
72 75parallel
Strand 4
B
96 99parallel
Strand 5
B
120 122parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 54first strand
Strand 2
B
57 58anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
136 139first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
174 179anti-parallel
Strand 4
B
147 154parallel
Strand 5
B
203 206parallel
Strand 6
B
230 232parallel
Strand 7
B
265 266parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
340 342first strand
Strand 2
B
291 295parallel
Strand 3
B
366 371parallel
Strand 4
B
400 405parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
480 481first strand
Strand 2
B
690 694anti-parallel
Strand 3
B
670 681anti-parallel
Strand 4
B
583 592anti-parallel
Strand 5
B
596 602anti-parallel
Strand 6
B
615 617anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
480 481first strand
Strand 2
B
690 694anti-parallel
Strand 3
B
670 681anti-parallel
Strand 4
B
684 687anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
501 503first strand
Strand 2
B
571 575anti-parallel
Strand 3
B
520 524anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
716 719first strand
Strand 2
B
725 730anti-parallel
Strand 3
B
778 786anti-parallel
Strand 4
B
791 801anti-parallel
Strand 5
B
808 814anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
752 755first strand
Strand 2
B
758 761anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
842 847first strand
Strand 2
B
874 879anti-parallel
Strand 3
B
865 867anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 47first strand
Strand 2
C
15 18parallel
Strand 3
C
72 75parallel
Strand 4
C
96 99parallel
Strand 5
C
120 122parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 54first strand
Strand 2
C
57 58anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 139first strand
Strand 2
C
128 131anti-parallel
Strand 3
C
174 179anti-parallel
Strand 4
C
147 154parallel
Strand 5
C
203 206parallel
Strand 6
C
230 232parallel
Strand 7
C
265 266parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
314 315first strand
Strand 2
C
290 294parallel
Strand 3
C
340 341parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
314 315first strand
Strand 2
C
290 294parallel
Strand 3
C
366 371parallel
Strand 4
C
400 405parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
480 481first strand
Strand 2
C
690 694anti-parallel
Strand 3
C
670 681anti-parallel
Strand 4
C
583 592anti-parallel
Strand 5
C
596 602anti-parallel
Strand 6
C
615 617anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
480 481first strand
Strand 2
C
690 694anti-parallel
Strand 3
C
670 681anti-parallel
Strand 4
C
684 687anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
501 503first strand
Strand 2
C
571 575anti-parallel
Strand 3
C
520 524anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
716 719first strand
Strand 2
C
725 730anti-parallel
Strand 3
C
778 786anti-parallel
Strand 4
C
791 801anti-parallel
Strand 5
C
808 814anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
752 755first strand
Strand 2
C
758 761anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
842 847first strand
Strand 2
C
873 879anti-parallel
Strand 3
C
865 868anti-parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 47first strand
Strand 2
D
15 18parallel
Strand 3
D
72 75parallel
Strand 4
D
96 99parallel
Strand 5
D
120 122parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 54first strand
Strand 2
D
57 58anti-parallel
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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
136 139first strand
Strand 2
D
128 131anti-parallel
Strand 3
D
174 179anti-parallel
Strand 4
D
147 154parallel
Strand 5
D
203 207parallel
Strand 6
D
230 232parallel
Strand 7
D
265 266parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
314 315first strand
Strand 2
D
290 295parallel
Strand 3
D
340 342parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
314 315first strand
Strand 2
D
290 295parallel
Strand 3
D
366 371parallel
Strand 4
D
400 405parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
480 481first strand
Strand 2
D
690 694anti-parallel
Strand 3
D
670 681anti-parallel
Strand 4
D
583 592anti-parallel
Strand 5
D
596 602anti-parallel
Strand 6
D
615 617anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
480 481first strand
Strand 2
D
690 694anti-parallel
Strand 3
D
670 681anti-parallel
Strand 4
D
684 687anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
501 503first strand
Strand 2
D
571 575anti-parallel
Strand 3
D
520 524anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
716 719first strand
Strand 2
D
725 730anti-parallel
Strand 3
D
778 786anti-parallel
Strand 4
D
791 801anti-parallel
Strand 5
D
808 814anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
752 755first strand
Strand 2
D
758 761anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
842 847first strand
Strand 2
D
874 879anti-parallel
Strand 3
D
865 867anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il