Analysis of interatomic Contacts of Structural Units in PDB entry:
9ITH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ITH entry

There is 1 chain in PDB entry 9ITH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 119GLU 1781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 9ITH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 130Right-handed alpha
Helix 2
AA2
A
130 149Right-handed alpha
Helix 3
AA3
A
159 180Right-handed alpha
Helix 4
AA4
A
192 210Right-handed alpha
Helix 5
AA5
A
218 227Right-handed 310
Helix 6
AA6
A
228 233Right-handed alpha
Helix 7
AA7
A
233 250Right-handed alpha
Helix 8
AA8
A
251 272Right-handed alpha
Helix 9
AA9
A
303 308Right-handed alpha
Helix 10
AB1
A
348 352Right-handed 310
Helix 11
AB2
A
357 370Right-handed alpha
Helix 12
AB3
A
373 386Right-handed alpha
Helix 13
AB4
A
389 400Right-handed alpha
Helix 14
AB5
A
402 429Right-handed alpha
Helix 15
AB6
A
702 715Right-handed alpha
Helix 16
AB7
A
716 735Right-handed alpha
Helix 17
AB8
A
742 771Right-handed alpha
Helix 18
AB9
A
772 777Right-handed alpha
Helix 19
AC1
A
782 797Right-handed alpha
Helix 20
AC2
A
805 810Right-handed alpha
Helix 21
AC3
A
811 820Right-handed 310
Helix 22
AC4
A
822 838Right-handed alpha
Helix 23
AC5
A
839 862Right-handed alpha
Helix 24
AC6
A
863 867Right-handed 310
Helix 25
AC7
A
883 896Right-handed alpha
Helix 26
AC8
A
899 911Right-handed alpha
Helix 27
AC9
A
911 919Right-handed alpha
Helix 28
AD1
A
920 944Right-handed alpha
Helix 29
AD2
A
1190 1204Right-handed alpha
Helix 30
AD3
A
1204 1221Right-handed alpha
Helix 31
AD4
A
1222 1225Right-handed 310
Helix 32
AD5
A
1232 1269Right-handed alpha
Helix 33
AD6
A
1271 1291Right-handed alpha
Helix 34
AD7
A
1298 1303Right-handed alpha
Helix 35
AD8
A
1304 1311Right-handed 310
Helix 36
AD9
A
1312 1317Right-handed alpha
Helix 37
AE1
A
1317 1330Right-handed alpha
Helix 38
AE2
A
1330 1357Right-handed alpha
Helix 39
AE3
A
1380 1385Right-handed alpha
Helix 40
AE4
A
1404 1418Right-handed alpha
Helix 41
AE5
A
1420 1429Right-handed alpha
Helix 42
AE6
A
1443 1445Right-handed 310
Helix 43
AE7
A
1446 1480Right-handed alpha
Helix 44
AE8
A
1488 1502Right-handed alpha
Helix 45
AE9
A
1521 1526Right-handed alpha
Helix 46
AF1
A
1527 1546Right-handed alpha
Helix 47
AF2
A
1553 1579Right-handed alpha
Helix 48
AF3
A
1586 1590Right-handed 310
Helix 49
AF4
A
1591 1608Right-handed alpha
Helix 50
AF5
A
1609 1615Right-handed 310
Helix 51
AF6
A
1617 1627Right-handed alpha
Helix 52
AF7
A
1629 1634Right-handed alpha
Helix 53
AF8
A
1635 1638Right-handed 310
Helix 54
AF9
A
1640 1679Right-handed alpha
Helix 55
AG1
A
1696 1708Right-handed alpha
Helix 56
AG2
A
1712 1721Right-handed alpha
Helix 57
AG3
A
1744 1778Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9ITH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
339 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
301 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1361 1364first strand
Strand 2
A
1394 1397anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il