Analysis of interatomic Contacts of Structural Units in PDB entry:
9ITJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ITJ entry

There are 26 chains in PDB entry 9ITJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 27SER 519
B
GLN 23ASN 520
C
ILE 4TYR 521
D
ALA 3ALA 468
E
ALA 3ALA 468
F
ALA 3GLN 470
G
PRO 2ALA 286
H
GLU 2PHE 72
I
GLU 2GLY 73
J
GLU 2GLY 73
K
GLU 2GLY 73
L
GLU 2GLY 73
M
GLU 2PHE 72
N
GLU 2GLY 73
O
GLU 2GLY 73
P
GLU 2GLY 73
Q
GLU 2GLY 73
R
PRO 2LEU 131
T
HIS 31THR 304
U
PRO 8LEU 160
V
GLY 5ALA 158
X
GLY 5ALA 159
Y
PRO 8LEU 160
Z
HIS 31THR 304
S
ARG 8LEU 154
W
ARG 8LEU 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are186 helices in PDB entry 9ITJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
157 164Right-handed alpha
Helix 2
AA2
A
181 193Right-handed alpha
Helix 3
AA3
A
208 222Right-handed alpha
Helix 4
AA4
A
224 226Right-handed 310
Helix 5
AA5
A
244 259Right-handed alpha
Helix 6
AA6
A
278 292Right-handed alpha
Helix 7
AA7
A
297 301Right-handed 310
Helix 8
AA8
A
304 314Right-handed alpha
Helix 9
AA9
A
320 324Right-handed 310
Helix 10
AB1
A
343 353Right-handed alpha
Helix 11
AB2
A
360 366Right-handed alpha
Helix 12
AB3
A
387 408Right-handed alpha
Helix 13
AB4
A
409 413Right-handed 310
Helix 14
AB5
A
418 436Right-handed alpha
Helix 15
AB6
A
444 457Right-handed alpha
Helix 16
AB7
A
464 466Right-handed 310
Helix 17
AB8
A
467 482Right-handed alpha
Helix 18
AB9
A
483 493Right-handed alpha
Helix 19
AC1
A
501 519Right-handed alpha
Helix 20
AC2
B
107 111Right-handed 310
Helix 21
AC3
B
157 164Right-handed alpha
Helix 22
AC4
B
181 193Right-handed alpha
Helix 23
AC5
B
208 222Right-handed alpha
Helix 24
AC6
B
238 245Right-handed alpha
Helix 25
AC7
B
246 260Right-handed alpha
Helix 26
AC8
B
277 292Right-handed alpha
Helix 27
AC9
B
297 301Right-handed 310
Helix 28
AD1
B
302 304Right-handed 310
Helix 29
AD2
B
305 314Right-handed alpha
Helix 30
AD3
B
320 324Right-handed 310
Helix 31
AD4
B
337 340Right-handed 310
Helix 32
AD5
B
343 353Right-handed alpha
Helix 33
AD6
B
360 366Right-handed alpha
Helix 34
AD7
B
381 386Right-handed 310
Helix 35
AD8
B
387 414Right-handed alpha
Helix 36
AD9
B
418 435Right-handed alpha
Helix 37
AE1
B
444 457Right-handed alpha
Helix 38
AE2
B
464 466Right-handed 310
Helix 39
AE3
B
467 482Right-handed alpha
Helix 40
AE4
B
483 493Right-handed alpha
Helix 41
AE5
B
501 506Right-handed alpha
Helix 42
AE6
B
508 519Right-handed alpha
Helix 43
AE7
C
5 12Right-handed alpha
Helix 44
AE8
C
14 19Right-handed alpha
Helix 45
AE9
C
107 111Right-handed 310
Helix 46
AF1
C
157 164Right-handed alpha
Helix 47
AF2
C
181 192Right-handed alpha
Helix 48
AF3
C
208 222Right-handed alpha
Helix 49
AF4
C
238 259Right-handed alpha
Helix 50
AF5
C
277 292Right-handed alpha
Helix 51
AF6
C
297 301Right-handed 310
Helix 52
AF7
C
302 304Right-handed 310
Helix 53
AF8
C
305 315Right-handed alpha
Helix 54
AF9
C
343 353Right-handed alpha
Helix 55
AG1
C
360 367Right-handed alpha
Helix 56
AG2
C
381 386Right-handed 310
Helix 57
AG3
C
387 407Right-handed alpha
Helix 58
AG4
C
408 414Right-handed 310
Helix 59
AG5
C
418 436Right-handed alpha
Helix 60
AG6
C
444 457Right-handed alpha
Helix 61
AG7
C
464 466Right-handed 310
Helix 62
AG8
C
467 482Right-handed alpha
Helix 63
AG9
C
483 493Right-handed alpha
Helix 64
AH1
C
501 519Right-handed alpha
Helix 65
AH2
D
134 140Right-handed alpha
Helix 66
AH3
D
158 174Right-handed alpha
Helix 67
AH4
D
186 191Right-handed alpha
Helix 68
AH5
D
194 201Right-handed alpha
Helix 69
AH6
D
222 243Right-handed alpha
Helix 70
AH7
D
253 269Right-handed alpha
Helix 71
AH8
D
280 290Right-handed alpha
Helix 72
AH9
D
315 323Right-handed alpha
Helix 73
AI1
D
332 338Right-handed alpha
Helix 74
AI2
D
360 370Right-handed alpha
Helix 75
AI3
D
379 388Right-handed alpha
Helix 76
AI4
D
389 391Right-handed 310
Helix 77
AI5
D
395 410Right-handed alpha
Helix 78
AI6
D
417 422Right-handed alpha
Helix 79
AI7
D
429 443Right-handed alpha
Helix 80
AI8
D
444 447Right-handed 310
Helix 81
AI9
D
458 468Right-handed alpha
Helix 82
AJ1
E
83 87Right-handed 310
Helix 83
AJ2
E
134 140Right-handed alpha
Helix 84
AJ3
E
158 174Right-handed alpha
Helix 85
AJ4
E
191 201Right-handed alpha
Helix 86
AJ5
E
222 243Right-handed alpha
Helix 87
AJ6
E
253 269Right-handed alpha
Helix 88
AJ7
E
280 288Right-handed alpha
Helix 89
AJ8
E
315 323Right-handed alpha
Helix 90
AJ9
E
332 338Right-handed alpha
Helix 91
AK1
E
355 360Right-handed alpha
Helix 92
AK2
E
360 388Right-handed alpha
Helix 93
AK3
E
389 392Right-handed 310
Helix 94
AK4
E
395 410Right-handed alpha
Helix 95
AK5
E
417 422Right-handed alpha
Helix 96
AK6
E
429 443Right-handed alpha
Helix 97
AK7
E
458 468Right-handed alpha
Helix 98
AK8
F
83 87Right-handed 310
Helix 99
AK9
F
134 140Right-handed alpha
Helix 100
AL1
F
158 171Right-handed alpha
Helix 101
AL2
F
193 201Right-handed alpha
Helix 102
AL3
F
222 243Right-handed alpha
Helix 103
AL4
F
253 269Right-handed alpha
Helix 104
AL5
F
280 290Right-handed alpha
Helix 105
AL6
F
315 322Right-handed alpha
Helix 106
AL7
F
323 325Right-handed 310
Helix 107
AL8
F
332 338Right-handed alpha
Helix 108
AL9
F
345 349Right-handed 310
Helix 109
AM1
F
360 380Right-handed alpha
Helix 110
AM2
F
380 387Right-handed alpha
Helix 111
AM3
F
388 392Right-handed 310
Helix 112
AM4
F
393 411Right-handed alpha
Helix 113
AM5
F
414 418Right-handed 310
Helix 114
AM6
F
429 443Right-handed alpha
Helix 115
AM7
F
449 454Right-handed 310
Helix 116
AM8
F
458 470Right-handed alpha
Helix 117
AM9
G
5 59Right-handed alpha
Helix 118
AN1
G
64 68Right-handed 310
Helix 119
AN2
G
93 112Right-handed alpha
Helix 120
AN3
G
122 133Right-handed alpha
Helix 121
AN4
G
148 166Right-handed alpha
Helix 122
AN5
G
198 203Right-handed alpha
Helix 123
AN6
G
212 286Right-handed alpha
Helix 124
AN7
H
3 38Right-handed alpha
Helix 125
AN8
H
41 70Right-handed alpha
Helix 126
AN9
I
3 38Right-handed alpha
Helix 127
AO1
I
41 70Right-handed alpha
Helix 128
AO2
J
3 38Right-handed alpha
Helix 129
AO3
J
41 72Right-handed alpha
Helix 130
AO4
K
3 38Right-handed alpha
Helix 131
AO5
K
41 72Right-handed alpha
Helix 132
AO6
L
3 38Right-handed alpha
Helix 133
AO7
L
41 73Right-handed alpha
Helix 134
AO8
M
3 38Right-handed alpha
Helix 135
AO9
M
41 72Right-handed alpha
Helix 136
AP1
N
3 15Right-handed alpha
Helix 137
AP2
N
17 38Right-handed alpha
Helix 138
AP3
N
41 73Right-handed alpha
Helix 139
AP4
O
3 38Right-handed alpha
Helix 140
AP5
O
41 72Right-handed alpha
Helix 141
AP6
P
3 15Right-handed alpha
Helix 142
AP7
P
18 38Right-handed alpha
Helix 143
AP8
P
41 72Right-handed alpha
Helix 144
AP9
Q
3 38Right-handed alpha
Helix 145
AQ1
Q
41 72Right-handed alpha
Helix 146
AQ2
R
92 100Right-handed alpha
Helix 147
AQ3
R
107 128Right-handed alpha
Helix 148
AQ4
T
49 72Right-handed alpha
Helix 149
AQ5
T
78 99Right-handed alpha
Helix 150
AQ6
T
102 124Right-handed alpha
Helix 151
AQ7
T
186 189Right-handed 310
Helix 152
AQ8
T
190 214Right-handed alpha
Helix 153
AQ9
T
229 266Right-handed alpha
Helix 154
AR1
T
273 304Right-handed alpha
Helix 155
AR2
U
9 139Right-handed alpha
Helix 156
AR3
U
140 147Right-handed alpha
Helix 157
AR4
U
148 160Right-handed alpha
Helix 158
AR5
V
7 29Right-handed alpha
Helix 159
AR6
V
29 113Right-handed alpha
Helix 160
AR7
V
113 120Right-handed alpha
Helix 161
AR8
V
126 137Right-handed alpha
Helix 162
AR9
V
148 158Right-handed alpha
Helix 163
AS1
X
7 122Right-handed alpha
Helix 164
AS2
X
126 138Right-handed alpha
Helix 165
AS3
X
149 155Right-handed alpha
Helix 166
AS4
Y
9 148Right-handed alpha
Helix 167
AS5
Y
149 158Right-handed 310
Helix 168
AS6
Z
49 53Right-handed 310
Helix 169
AS7
Z
54 66Right-handed alpha
Helix 170
AS8
Z
78 99Right-handed alpha
Helix 171
AS9
Z
106 125Right-handed alpha
Helix 172
AT1
Z
192 214Right-handed alpha
Helix 173
AT2
Z
233 267Right-handed alpha
Helix 174
AT3
Z
274 304Right-handed alpha
Helix 175
AT4
S
10 33Right-handed alpha
Helix 176
AT5
S
37 45Right-handed alpha
Helix 177
AT6
S
50 63Right-handed alpha
Helix 178
AT7
S
65 79Right-handed alpha
Helix 179
AT8
S
98 110Right-handed alpha
Helix 180
AT9
S
143 154Right-handed alpha
Helix 181
AU1
W
10 30Right-handed alpha
Helix 182
AU2
W
39 45Right-handed alpha
Helix 183
AU3
W
50 64Right-handed alpha
Helix 184
AU4
W
68 81Right-handed alpha
Helix 185
AU5
W
98 109Right-handed alpha
Helix 186
AU6
W
142 152Right-handed alpha
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There are 35 sheets in PDB entry 9ITJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 31first strand
Strand 2
A
94 96anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 40first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
F
5 11anti-parallel
Strand 5
A
53 54first strand
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 40first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
F
70 73first strand
Strand 5
F
30 33anti-parallel
Strand 6
F
41 48anti-parallel
Strand 7
F
53 57anti-parallel
Strand 8
F
14 18anti-parallel
Strand 9
F
5 11anti-parallel
Strand 10
A
53 54first strand
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 106first strand
Strand 2
A
132 135anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
228 233parallel
Strand 3
A
199 205parallel
Strand 4
A
270 277parallel
Strand 5
A
327 335parallel
Strand 6
A
172 176parallel
Strand 7
A
355 359parallel
Strand 8
A
378 379anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
261 263first strand
Strand 2
A
266 268anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 35first strand
Strand 2
B
39 41anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
67 74anti-parallel
Strand 5
B
52 54anti-parallel
Strand 6
B
94 101anti-parallel
Strand 7
B
26 31anti-parallel
Strand 8
W
137 140anti-parallel
Strand 9
W
130 134anti-parallel
Strand 10
W
89 93anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 106first strand
Strand 2
B
132 135anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 115first strand
Strand 2
B
228 233parallel
Strand 3
B
199 205parallel
Strand 4
B
270 275parallel
Strand 5
B
327 330parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
333 335first strand
Strand 2
B
173 176parallel
Strand 3
B
355 359parallel
Strand 4
B
378 379anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
261 263first strand
Strand 2
B
266 268anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
27 28first strand
Strand 2
S
137 139anti-parallel
Strand 3
S
131 134anti-parallel
Strand 4
S
90 92anti-parallel
Strand 5
S
120 121parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 31first strand
Strand 2
C
94 95anti-parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 40first strand
Strand 2
C
77 82anti-parallel
Strand 3
C
68 74anti-parallel
Strand 4
E
5 11anti-parallel
Strand 5
E
14 18anti-parallel
Strand 6
E
53 57anti-parallel
Strand 7
E
40 49anti-parallel
Strand 8
E
31 34anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 101first strand
Strand 2
C
52 54anti-parallel
Strand 3
C
68 74anti-parallel
Strand 4
E
5 11anti-parallel
Strand 5
E
70 71anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
103 106first strand
Strand 2
C
132 135anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 115first strand
Strand 2
C
228 231parallel
Strand 3
C
199 202parallel
Strand 4
C
270 274parallel
Strand 5
C
327 330parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
333 336first strand
Strand 2
C
172 177parallel
Strand 3
C
355 359parallel
Strand 4
C
378 379anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
261 263first strand
Strand 2
C
266 268anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 49first strand
Strand 2
D
53 57anti-parallel
Strand 3
D
14 18anti-parallel
Strand 4
D
4 11anti-parallel
Strand 5
D
70 72anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
33 34first strand
Strand 2
D
40 41anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
79 81first strand
Strand 2
D
110 112anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 91first strand
Strand 2
D
212 217parallel
Strand 3
D
177 183parallel
Strand 4
D
247 252parallel
Strand 5
D
300 305parallel
Strand 6
D
148 151parallel
Strand 7
D
327 329parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
202 203first strand
Strand 2
D
206 207anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
79 81first strand
Strand 2
E
110 112anti-parallel
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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
90 91first strand
Strand 2
E
212 218parallel
Strand 3
E
177 185parallel
Strand 4
E
246 251parallel
Strand 5
E
299 305parallel
Strand 6
E
148 152parallel
Strand 7
E
327 330parallel
Strand 8
E
350 351anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
129 130first strand
Strand 2
E
143 144anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
202 203first strand
Strand 2
E
206 207anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
79 81first strand
Strand 2
F
110 112anti-parallel
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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
90 91first strand
Strand 2
F
212 215parallel
Strand 3
F
176 181parallel
Strand 4
F
246 251parallel
Strand 5
F
300 307parallel
Strand 6
F
148 153parallel
Strand 7
F
327 330parallel
Strand 8
F
350 351anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
128 129first strand
Strand 2
F
144 145anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
202 203first strand
Strand 2
F
206 207anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
138 140first strand
Strand 2
G
115 121parallel
Strand 3
G
78 84parallel
Strand 4
G
172 176parallel
Strand 5
G
186 190anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
208 209first strand
Strand 2
R
40 43parallel
Strand 3
R
56 69anti-parallel
Strand 4
R
73 82anti-parallel
Strand 5
R
3 8parallel
Strand 6
R
18 19anti-parallel
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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
13 15first strand
Strand 2
R
3 8anti-parallel
Strand 3
R
73 82parallel
Strand 4
R
56 69anti-parallel
Strand 5
R
47 53anti-parallel
Strand 6
R
21 25anti-parallel
Strand 7
R
30 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il