Analysis of interatomic Contacts of Structural Units in PDB entry:
9ITM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ITM entry

There are 16 chains in PDB entry 9ITM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 MET 1PHE 72
I
 MET 1PHE 72
J
 MET 1PHE 72
K
 MET 1PHE 72
L
 MET 1PHE 72
M
 MET 1PHE 72
N
 MET 1PHE 72
O
 MET 1PHE 72
P
 MET 1PHE 72
Q
 MET 1PHE 72
T
 ILE 19THR 304
U
 MET 1VAL 48
V
 GLY 5ILE 44
X
 ALA 3ILE 44
Y
 GLU 2VAL 48
Z
 VAL 12THR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9ITM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
4 38Right-handed alpha
Helix 2
AA2
H
41 72Right-handed alpha
Helix 3
AA3
I
3 38Right-handed alpha
Helix 4
AA4
I
41 71Right-handed alpha
Helix 5
AA5
J
3 38Right-handed alpha
Helix 6
AA6
J
41 72Right-handed alpha
Helix 7
AA7
K
3 16Right-handed alpha
Helix 8
AA8
K
17 38Right-handed alpha
Helix 9
AA9
K
41 72Right-handed alpha
Helix 10
AB1
L
3 17Right-handed alpha
Helix 11
AB2
L
18 37Right-handed alpha
Helix 12
AB3
L
38 40Right-handed 310
Helix 13
AB4
L
41 72Right-handed alpha
Helix 14
AB5
M
3 38Right-handed alpha
Helix 15
AB6
M
41 72Right-handed alpha
Helix 16
AB7
N
3 38Right-handed alpha
Helix 17
AB8
N
41 72Right-handed alpha
Helix 18
AB9
O
5 38Right-handed alpha
Helix 19
AC1
O
41 72Right-handed alpha
Helix 20
AC2
P
3 38Right-handed alpha
Helix 21
AC3
P
41 71Right-handed alpha
Helix 22
AC4
Q
3 38Right-handed alpha
Helix 23
AC5
Q
41 72Right-handed alpha
Helix 24
AC6
T
19 23Right-handed 310
Helix 25
AC7
T
50 71Right-handed alpha
Helix 26
AC8
T
79 97Right-handed alpha
Helix 27
AC9
T
106 125Right-handed alpha
Helix 28
AD1
T
171 178Right-handed 310
Helix 29
AD2
T
186 190Right-handed 310
Helix 30
AD3
T
192 212Right-handed alpha
Helix 31
AD4
T
216 221Right-handed alpha
Helix 32
AD5
T
227 268Right-handed alpha
Helix 33
AD6
T
272 304Right-handed alpha
Helix 34
AD7
U
9 29Right-handed alpha
Helix 35
AD8
U
30 48Right-handed alpha
Helix 36
AD9
V
7 26Right-handed alpha
Helix 37
AE1
V
30 43Right-handed alpha
Helix 38
AE2
X
7 29Right-handed alpha
Helix 39
AE3
X
29 43Right-handed alpha
Helix 40
AE4
Y
7 29Right-handed alpha
Helix 41
AE5
Y
30 47Right-handed alpha
Helix 42
AE6
Z
17 24Right-handed 310
Helix 43
AE7
Z
50 71Right-handed alpha
Helix 44
AE8
Z
79 99Right-handed alpha
Helix 45
AE9
Z
102 125Right-handed alpha
Helix 46
AF1
Z
172 176Right-handed 310
Helix 47
AF2
Z
186 189Right-handed 310
Helix 48
AF3
Z
190 214Right-handed alpha
Helix 49
AF4
Z
215 220Right-handed alpha
Helix 50
AF5
Z
221 225Right-handed 310
Helix 51
AF6
Z
229 268Right-handed alpha
Helix 52
AF7
Z
273 304Right-handed alpha
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There are 3 sheets in PDB entry 9ITM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
132 133first strand
Strand 2
U
5 6anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
4 5first strand
Strand 2
Z
133 135anti-parallel
Strand 3
Z
180 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
39 41first strand
Strand 2
Z
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il