Analysis of interatomic Contacts of Structural Units in PDB entry:
9ITR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ITR entry

There are 16 chains in PDB entry 9ITR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 2PHE 72
I
 GLU 2PHE 72
J
 GLU 2PHE 72
K
 GLU 2PHE 72
L
 GLU 2PHE 72
M
 GLU 2PHE 72
N
 GLU 2PHE 72
O
 GLU 2PHE 72
P
 GLU 2PHE 72
Q
 GLU 2PHE 72
T
 ILE 19THR 304
Z
 SER 18THR 304
Y
 PRO 8LEU 160
V
 ASN 7ALA 158
U
 LEU 10ALA 159
X
 THR 9LEU 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9ITR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
3 38Right-handed alpha
Helix 2
AA2
H
42 72Right-handed alpha
Helix 3
AA3
I
3 37Right-handed alpha
Helix 4
AA4
I
41 72Right-handed alpha
Helix 5
AA5
J
3 19Right-handed alpha
Helix 6
AA6
J
20 38Right-handed alpha
Helix 7
AA7
J
41 72Right-handed alpha
Helix 8
AA8
K
3 38Right-handed alpha
Helix 9
AA9
K
41 72Right-handed alpha
Helix 10
AB1
L
3 38Right-handed alpha
Helix 11
AB2
L
41 71Right-handed alpha
Helix 12
AB3
M
3 38Right-handed alpha
Helix 13
AB4
M
41 72Right-handed alpha
Helix 14
AB5
N
3 15Right-handed alpha
Helix 15
AB6
N
17 38Right-handed alpha
Helix 16
AB7
N
41 72Right-handed alpha
Helix 17
AB8
O
3 38Right-handed alpha
Helix 18
AB9
O
42 72Right-handed alpha
Helix 19
AC1
P
3 15Right-handed alpha
Helix 20
AC2
P
17 38Right-handed alpha
Helix 21
AC3
P
41 72Right-handed alpha
Helix 22
AC4
Q
3 38Right-handed alpha
Helix 23
AC5
Q
41 72Right-handed alpha
Helix 24
AC6
T
50 71Right-handed alpha
Helix 25
AC7
T
79 97Right-handed alpha
Helix 26
AC8
T
106 124Right-handed alpha
Helix 27
AC9
T
190 212Right-handed alpha
Helix 28
AD1
T
213 220Right-handed 310
Helix 29
AD2
T
226 268Right-handed alpha
Helix 30
AD3
T
272 304Right-handed alpha
Helix 31
AD4
Z
20 25Right-handed alpha
Helix 32
AD5
Z
50 71Right-handed alpha
Helix 33
AD6
Z
78 99Right-handed alpha
Helix 34
AD7
Z
102 124Right-handed alpha
Helix 35
AD8
Z
190 214Right-handed alpha
Helix 36
AD9
Z
214 220Right-handed alpha
Helix 37
AE1
Z
231 268Right-handed alpha
Helix 38
AE2
Z
273 304Right-handed alpha
Helix 39
AE3
Y
9 26Right-handed alpha
Helix 40
AE4
Y
29 82Right-handed alpha
Helix 41
AE5
Y
82 139Right-handed alpha
Helix 42
AE6
Y
140 147Right-handed alpha
Helix 43
AE7
Y
148 158Right-handed alpha
Helix 44
AE8
V
8 29Right-handed alpha
Helix 45
AE9
V
29 112Right-handed alpha
Helix 46
AF1
V
114 120Right-handed alpha
Helix 47
AF2
V
126 135Right-handed alpha
Helix 48
AF3
V
148 158Right-handed alpha
Helix 49
AF4
U
11 41Right-handed alpha
Helix 50
AF5
U
45 123Right-handed alpha
Helix 51
AF6
U
123 140Right-handed alpha
Helix 52
AF7
U
148 156Right-handed alpha
Helix 53
AF8
X
10 30Right-handed alpha
Helix 54
AF9
X
33 148Right-handed alpha
Helix 55
AG1
X
149 156Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9ITR.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
39 41first strand
Strand 2
Z
48 49anti-parallel
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