Analysis of interatomic Contacts of Structural Units in PDB entry:
9IV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IV3 entry

There are 8 chains in PDB entry 9IV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	THR 94
B	SER 2	THR 94
C	SER 2	ARG 111
D	SER 2	THR 94
E	SER 2	THR 94
F	SER 2	ARG 111
G	PRO 15	ALA 142
H	PRO 15	ALA 142

There are 32 helices in PDB entry 9IV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	49	65	Right-handed alpha
Helix 3	AA3	A	82	88	Right-handed 310
Helix 4	AA4	B	12	27	Right-handed alpha
Helix 5	AA5	B	49	66	Right-handed alpha
Helix 6	AA6	B	82	87	Right-handed alpha
Helix 7	AA7	C	12	26	Right-handed alpha
Helix 8	AA8	C	50	65	Right-handed alpha
Helix 9	AA9	C	90	92	Right-handed 310
Helix 10	AB1	C	93	104	Right-handed alpha
Helix 11	AB2	D	13	26	Right-handed alpha
Helix 12	AB3	D	49	65	Right-handed alpha
Helix 13	AB4	D	82	87	Right-handed alpha
Helix 14	AB5	E	12	27	Right-handed alpha
Helix 15	AB6	E	49	65	Right-handed alpha
Helix 16	AB7	E	82	87	Right-handed 310
Helix 17	AB8	F	12	26	Right-handed alpha
Helix 18	AB9	F	50	65	Right-handed alpha
Helix 19	AC1	F	90	92	Right-handed 310
Helix 20	AC2	F	93	104	Right-handed alpha
Helix 21	AC3	G	16	27	Right-handed alpha
Helix 22	AC4	G	27	42	Right-handed alpha
Helix 23	AC5	G	63	74	Right-handed alpha
Helix 24	AC6	G	78	88	Right-handed alpha
Helix 25	AC7	G	114	123	Right-handed alpha
Helix 26	AC8	G	125	142	Right-handed alpha
Helix 27	AC9	H	16	27	Right-handed alpha
Helix 28	AD1	H	27	42	Right-handed alpha
Helix 29	AD2	H	63	74	Right-handed alpha
Helix 30	AD3	H	78	88	Right-handed alpha
Helix 31	AD4	H	114	123	Right-handed alpha
Helix 32	AD5	H	125	142	Right-handed alpha

There are 8 sheets in PDB entry 9IV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	38	first strand
Strand 2	A	41	48	anti-parallel
Strand 3	A	4	11	anti-parallel
Strand 4	A	72	78	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	38	first strand
Strand 2	B	41	48	anti-parallel
Strand 3	B	4	11	anti-parallel
Strand 4	B	72	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	38	first strand
Strand 2	C	41	49	anti-parallel
Strand 3	C	3	11	anti-parallel
Strand 4	C	71	80	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	G	103	109	anti-parallel
Strand 3	G	94	99	anti-parallel
Strand 4	G	48	52	parallel
Strand 5	G	61	62	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	36	first strand
Strand 2	D	41	48	anti-parallel
Strand 3	D	4	11	anti-parallel
Strand 4	D	71	78	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	38	first strand
Strand 2	E	41	48	anti-parallel
Strand 3	E	4	11	anti-parallel
Strand 4	E	72	78	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	38	first strand
Strand 2	F	41	49	anti-parallel
Strand 3	F	3	11	anti-parallel
Strand 4	F	71	79	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	88	first strand
Strand 2	H	103	109	anti-parallel
Strand 3	H	94	100	anti-parallel
Strand 4	H	48	52	parallel
Strand 5	H	61	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IV3