Analysis of interatomic Contacts of Structural Units in PDB entry:
9IVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9IVJ entry

There are 5 chains in PDB entry 9IVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	TYR 674
B	CYS 28	TRP 133
C	THR 43	ARG 220
H	GLN 1	SER 126
L	GLN 1	LEU 110

There are 36 helices in PDB entry 9IVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	47	Right-handed alpha
Helix 2	AA2	A	51	60	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	123	131	Right-handed alpha
Helix 6	AA6	A	141	148	Right-handed alpha
Helix 7	AA7	A	202	204	Right-handed 310
Helix 8	AA8	A	212	216	Right-handed alpha
Helix 9	AA9	A	231	242	Right-handed alpha
Helix 10	AB1	A	245	256	Right-handed alpha
Helix 11	AB2	A	257	275	Right-handed alpha
Helix 12	AB3	A	284	308	Right-handed alpha
Helix 13	AB4	A	315	336	Right-handed alpha
Helix 14	AB5	A	345	357	Right-handed alpha
Helix 15	AB6	A	363	367	Right-handed 310
Helix 16	AB7	A	368	382	Right-handed alpha
Helix 17	AB8	A	390	406	Right-handed alpha
Helix 18	AB9	A	414	433	Right-handed alpha
Helix 19	AC1	A	439	454	Right-handed alpha
Helix 20	AC2	A	455	469	Right-handed alpha
Helix 21	AC3	A	470	474	Right-handed 310
Helix 22	AC4	A	476	480	Right-handed 310
Helix 23	AC5	A	487	494	Right-handed alpha
Helix 24	AC6	A	502	517	Right-handed alpha
Helix 25	AC7	A	529	534	Right-handed 310
Helix 26	AC8	A	636	646	Right-handed alpha
Helix 27	AC9	B	41	45	Right-handed 310
Helix 28	AD1	B	54	59	Right-handed 310
Helix 29	AD2	B	82	96	Right-handed alpha
Helix 30	AD3	B	101	118	Right-handed alpha
Helix 31	AD4	B	120	125	Right-handed 310
Helix 32	AD5	C	66	72	Right-handed alpha
Helix 33	AD6	C	127	134	Right-handed alpha
Helix 34	AD7	C	148	155	Right-handed alpha
Helix 35	AD8	H	28	32	Right-handed 310
Helix 36	AD9	H	87	91	Right-handed 310

There are 14 sheets in PDB entry 9IVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	22	27	anti-parallel
Strand 3	B	47	50	parallel
Strand 4	B	61	65	anti-parallel
Strand 5	B	78	81	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	119	122	parallel
Strand 3	A	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	152	154	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	224	229	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	177	185	anti-parallel
Strand 5	A	167	173	anti-parallel
Strand 6	A	156	162	anti-parallel
Strand 7	A	339	341	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	547	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	577	583	anti-parallel
Strand 4	A	566	568	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	605	first strand
Strand 2	A	667	673	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	618	623	anti-parallel
Strand 5	A	627	633	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	215	218	anti-parallel
Strand 4	C	140	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	193	195	anti-parallel
Strand 3	C	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	102	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	102	anti-parallel
Strand 4	H	107	116	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	95	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	95	anti-parallel
Strand 4	L	98	101	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	21	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9IVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9IVJ