Analysis of interatomic Contacts of Structural Units in PDB entry:
9IVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IVT entry

There is 1 chain in PDB entry 9IVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PHE 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9IVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
285 292Right-handed alpha
Helix 2
AA2
A
318 322Right-handed 310
Helix 3
AA3
A
340 347Right-handed alpha
Helix 4
AA4
A
358 367Right-handed alpha
Helix 5
AA5
A
396 400Right-handed 310
Helix 6
AA6
A
438 444Right-handed alpha
Helix 7
AA7
A
463 467Right-handed 310
Helix 8
AA8
A
477 481Right-handed alpha
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There are 3 sheets in PDB entry 9IVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
324 330anti-parallel
Strand 4
A
355 356anti-parallel
Strand 5
A
348 349anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
324 330anti-parallel
Strand 4
A
488 495anti-parallel
Strand 5
A
371 378anti-parallel
Strand 6
A
384 394anti-parallel
Strand 7
A
403 410anti-parallel
Strand 8
A
421 423anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
475 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il