Analysis of interatomic Contacts of Structural Units in PDB entry:
9IX7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IX7 entry

There are 2 chains in PDB entry 9IX7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 69ILE 598
B
 ASP 68ILE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 9IX7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 104Right-handed alpha
Helix 2
AA2
A
126 128Right-handed 310
Helix 3
AA3
A
129 148Right-handed alpha
Helix 4
AA4
A
159 161Right-handed 310
Helix 5
AA5
A
162 174Right-handed alpha
Helix 6
AA6
A
240 249Right-handed alpha
Helix 7
AA7
A
262 271Right-handed alpha
Helix 8
AA8
A
271 283Right-handed alpha
Helix 9
AA9
A
285 290Right-handed alpha
Helix 10
AB1
A
291 306Right-handed alpha
Helix 11
AB2
A
309 322Right-handed alpha
Helix 12
AB3
A
327 338Right-handed alpha
Helix 13
AB4
A
351 358Right-handed 310
Helix 14
AB5
A
359 371Right-handed alpha
Helix 15
AB6
A
385 391Right-handed alpha
Helix 16
AB7
A
449 459Right-handed alpha
Helix 17
AB8
A
487 495Right-handed alpha
Helix 18
AB9
A
525 529Right-handed 310
Helix 19
AC1
A
530 535Right-handed alpha
Helix 20
AC2
A
555 566Right-handed alpha
Helix 21
AC3
A
576 585Right-handed alpha
Helix 22
AC4
A
587 591Right-handed 310
Helix 23
AC5
B
92 104Right-handed alpha
Helix 24
AC6
B
125 128Right-handed 310
Helix 25
AC7
B
129 148Right-handed alpha
Helix 26
AC8
B
159 161Right-handed 310
Helix 27
AC9
B
162 174Right-handed alpha
Helix 28
AD1
B
240 249Right-handed alpha
Helix 29
AD2
B
262 271Right-handed alpha
Helix 30
AD3
B
271 283Right-handed alpha
Helix 31
AD4
B
285 290Right-handed alpha
Helix 32
AD5
B
291 305Right-handed alpha
Helix 33
AD6
B
309 322Right-handed alpha
Helix 34
AD7
B
327 338Right-handed alpha
Helix 35
AD8
B
351 358Right-handed 310
Helix 36
AD9
B
359 371Right-handed alpha
Helix 37
AE1
B
385 391Right-handed alpha
Helix 38
AE2
B
449 459Right-handed alpha
Helix 39
AE3
B
487 495Right-handed alpha
Helix 40
AE4
B
525 529Right-handed 310
Helix 41
AE5
B
530 535Right-handed alpha
Helix 42
AE6
B
555 566Right-handed alpha
Helix 43
AE7
B
576 585Right-handed alpha
Helix 44
AE8
B
587 591Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9IX7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
73 78parallel
Strand 3
A
152 156parallel
Strand 4
A
177 179parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 418first strand
Strand 2
A
427 431anti-parallel
Strand 3
A
518 523anti-parallel
Strand 4
A
502 506parallel
Strand 5
A
468 472parallel
Strand 6
A
439 447parallel
Strand 7
A
540 544anti-parallel
Strand 8
A
549 553anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
509 510parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
73 78parallel
Strand 3
B
152 156parallel
Strand 4
B
177 179parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 418first strand
Strand 2
B
427 431anti-parallel
Strand 3
B
518 523anti-parallel
Strand 4
B
502 506parallel
Strand 5
B
468 472parallel
Strand 6
B
439 447parallel
Strand 7
B
540 544anti-parallel
Strand 8
B
549 552anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
509 510parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il