Analysis of interatomic Contacts of Structural Units in PDB entry:
9IZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9IZM entry

There are 2 chains in PDB entry 9IZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 739
B
 C -36 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 9IZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 37Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
58 65Right-handed alpha
Helix 4
AA4
A
73 79Right-handed 310
Helix 5
AA5
A
83 99Right-handed alpha
Helix 6
AA6
A
111 116Right-handed alpha
Helix 7
AA7
A
119 133Right-handed alpha
Helix 8
AA8
A
149 165Right-handed alpha
Helix 9
AA9
A
168 181Right-handed alpha
Helix 10
AB1
A
186 201Right-handed alpha
Helix 11
AB2
A
203 210Right-handed alpha
Helix 12
AB3
A
212 218Right-handed alpha
Helix 13
AB4
A
270 274Right-handed 310
Helix 14
AB5
A
277 286Right-handed alpha
Helix 15
AB6
A
347 355Right-handed alpha
Helix 16
AB7
A
355 360Right-handed alpha
Helix 17
AB8
A
363 374Right-handed alpha
Helix 18
AB9
A
383 388Right-handed alpha
Helix 19
AC1
A
400 419Right-handed alpha
Helix 20
AC2
A
420 458Right-handed alpha
Helix 21
AC3
A
467 478Right-handed alpha
Helix 22
AC4
A
483 519Right-handed alpha
Helix 23
AC5
A
541 547Right-handed alpha
Helix 24
AC6
A
550 554Right-handed 310
Helix 25
AC7
A
562 571Right-handed alpha
Helix 26
AC8
A
590 605Right-handed alpha
Helix 27
AC9
A
605 610Right-handed alpha
Helix 28
AD1
A
616 624Right-handed alpha
Helix 29
AD2
A
678 693Right-handed alpha
Helix 30
AD3
A
693 700Right-handed alpha
Helix 31
AD4
A
720 731Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9IZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
300 307anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
233 237anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
261 262anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
320 325anti-parallel
Strand 4
A
522 526parallel
Strand 5
A
629 633parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 578first strand
Strand 2
A
584 586anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 660first strand
Strand 2
A
648 652anti-parallel
Strand 3
A
734 736parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
715 716anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il