Analysis of interatomic Contacts of Structural Units in PDB entry:
9J04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J04 entry

There is 1 chain in PDB entry 9J04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9J04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
27 29Right-handed 310
Helix 4
AA4
A
30 36Right-handed alpha
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
131 155Right-handed alpha
Helix 7
AA7
A
160 175Right-handed alpha
Helix 8
AA8
A
184 211Right-handed alpha
Helix 9
AA9
A
229 231Right-handed 310
Helix 10
AB1
A
232 244Right-handed alpha
Helix 11
AB2
A
246 256Right-handed alpha
Helix 12
AB3
A
257 264Right-handed alpha
Helix 13
AB4
A
271 279Right-handed alpha
Helix 14
AB5
A
280 296Right-handed alpha
Helix 15
AB6
A
297 304Right-handed alpha
Helix 16
AB7
A
305 313Right-handed alpha
Helix 17
AB8
A
332 357Right-handed alpha
Helix 18
AB9
A
366 375Right-handed alpha
Helix 19
AC1
A
379 384Right-handed alpha
Helix 20
AC2
A
384 389Right-handed alpha
Helix 21
AC3
A
394 411Right-handed alpha
Helix 22
AC4
A
412 414Right-handed 310
Helix 23
AC5
A
424 449Right-handed alpha
Helix 24
AC6
A
453 464Right-handed alpha
Helix 25
AC7
A
466 476Right-handed alpha
Helix 26
AC8
A
477 481Right-handed 310
Helix 27
AC9
A
484 498Right-handed alpha
Helix 28
AD1
A
500 504Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9J04.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
109 111anti-parallel
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