Analysis of interatomic Contacts of Structural Units in PDB entry:
9J05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J05 entry

There are 3 chains in PDB entry 9J05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 20	LYS 400
B	GLN 45	SER 266
C	SER 31	CYS 238

There are 25 helices in PDB entry 9J05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	28	Right-handed alpha
Helix 2	AA2	A	28	45	Right-handed alpha
Helix 3	AA3	A	46	49	Right-handed 310
Helix 4	AA4	A	57	82	Right-handed alpha
Helix 5	AA5	A	86	96	Right-handed alpha
Helix 6	AA6	A	96	124	Right-handed alpha
Helix 7	AA7	A	137	151	Right-handed alpha
Helix 8	AA8	A	179	182	Right-handed 310
Helix 9	AA9	A	183	237	Right-handed alpha
Helix 10	AB1	A	239	262	Right-handed alpha
Helix 11	AB2	A	263	264	Right-handed 310
Helix 12	AB3	A	265	269	Right-handed 310
Helix 13	AB4	A	270	291	Right-handed alpha
Helix 14	AB5	A	293	327	Right-handed alpha
Helix 15	AB6	A	327	353	Right-handed alpha
Helix 16	AB7	A	357	377	Right-handed alpha
Helix 17	AB8	A	377	390	Right-handed alpha
Helix 18	AB9	A	390	400	Right-handed alpha
Helix 19	AC1	B	129	133	Right-handed 310
Helix 20	AC2	B	178	182	Right-handed 310
Helix 21	AC3	B	207	209	Right-handed 310
Helix 22	AC4	B	238	240	Right-handed 310
Helix 23	AC5	C	100	104	Right-handed 310
Helix 24	AC6	C	145	150	Right-handed alpha
Helix 25	AC7	C	207	213	Right-handed alpha

There are 10 sheets in PDB entry 9J05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	110	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	158	162	parallel
Strand 3	B	134	140	anti-parallel
Strand 4	B	76	81	anti-parallel
Strand 5	B	87	93	anti-parallel
Strand 6	B	100	102	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	158	162	parallel
Strand 3	B	134	140	anti-parallel
Strand 4	B	153	154	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	186	196	anti-parallel
Strand 3	B	227	236	anti-parallel
Strand 4	B	214	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	186	196	anti-parallel
Strand 3	B	227	236	anti-parallel
Strand 4	B	220	221	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	245	251	anti-parallel
Strand 3	B	256	262	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	126	129	parallel
Strand 3	C	106	109	anti-parallel
Strand 4	C	56	59	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	45	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	83	88	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	197	206	anti-parallel
Strand 4	C	183	187	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	168	174	anti-parallel
Strand 3	C	215	222	anti-parallel
Strand 4	C	229	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J05

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J05