Analysis of interatomic Contacts of Structural Units in PDB entry:
9J07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J07 entry

There is 1 chain in PDB entry 9J07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19SER 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9J07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 88Right-handed alpha
Helix 2
AA2
A
105 109Right-handed 310
Helix 3
AA3
A
120 136Right-handed alpha
Helix 4
AA4
A
149 160Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
230 242Right-handed alpha
Helix 7
AA7
A
300 312Right-handed alpha
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There are 3 sheets in PDB entry 9J07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
67 73parallel
Strand 5
A
138 148parallel
Strand 6
A
170 174parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
A
272 277parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
248 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
226 228anti-parallel
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