Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0C entry

There is 1 chain in PDB entry 9J0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9J0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 28Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
111 129Right-handed alpha
Helix 6
AA6
A
142 145Right-handed 310
Helix 7
AA7
A
146 164Right-handed alpha
Helix 8
AA8
A
182 188Right-handed alpha
Helix 9
AA9
A
204 213Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
223 230Right-handed alpha
Helix 12
AB3
A
240 254Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
281 284Right-handed 310
Helix 15
AB6
A
295 303Right-handed alpha
Helix 16
AB7
A
304 307Right-handed 310
Helix 17
AB8
A
340 344Right-handed 310
Helix 18
AB9
A
346 363Right-handed alpha
Helix 19
AC1
A
379 385Right-handed alpha
Helix 20
AC2
A
386 401Right-handed alpha
Helix 21
AC3
A
415 421Right-handed alpha
Helix 22
AC4
A
423 427Right-handed 310
Helix 23
AC5
A
467 478Right-handed alpha
Helix 24
AC6
A
480 486Right-handed alpha
Helix 25
AC7
A
494 496Right-handed 310
Helix 26
AC8
A
497 509Right-handed alpha
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There are 4 sheets in PDB entry 9J0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
132 136parallel
Strand 5
A
169 173parallel
Strand 6
A
190 194parallel
Strand 7
A
236 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
199 201parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
329 336anti-parallel
Strand 4
A
367 373parallel
Strand 5
A
405 414parallel
Strand 6
A
438 440parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
329 336anti-parallel
Strand 4
A
367 373parallel
Strand 5
A
405 414parallel
Strand 6
A
430 433parallel
Strand 7
A
491 492parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il