Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0E entry

There are 2 chains in PDB entry 9J0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16ALA 303
B
 THR 15ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9J0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
52 58Right-handed alpha
Helix 3
AA3
A
65 72Right-handed alpha
Helix 4
AA4
A
82 91Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
109 123Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
151 158Right-handed alpha
Helix 9
AA9
A
158 164Right-handed alpha
Helix 10
AB1
A
177 207Right-handed alpha
Helix 11
AB2
A
210 239Right-handed alpha
Helix 12
AB3
A
247 265Right-handed alpha
Helix 13
AB4
A
269 285Right-handed alpha
Helix 14
AB5
A
291 293Right-handed 310
Helix 15
AB6
A
294 301Right-handed alpha
Helix 16
AB7
B
25 38Right-handed alpha
Helix 17
AB8
B
52 58Right-handed alpha
Helix 18
AB9
B
65 72Right-handed alpha
Helix 19
AC1
B
82 91Right-handed alpha
Helix 20
AC2
B
93 98Right-handed alpha
Helix 21
AC3
B
109 123Right-handed alpha
Helix 22
AC4
B
135 139Right-handed 310
Helix 23
AC5
B
151 158Right-handed alpha
Helix 24
AC6
B
158 164Right-handed alpha
Helix 25
AC7
B
177 207Right-handed alpha
Helix 26
AC8
B
210 239Right-handed alpha
Helix 27
AC9
B
247 265Right-handed alpha
Helix 28
AD1
B
269 285Right-handed alpha
Helix 29
AD2
B
291 293Right-handed 310
Helix 30
AD3
B
294 301Right-handed alpha
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There are 2 sheets in PDB entry 9J0E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
42 45parallel
Strand 3
A
19 22parallel
Strand 4
A
75 78parallel
Strand 5
A
101 104parallel
Strand 6
A
126 132parallel
Strand 7
A
141 150anti-parallel
Strand 8
A
166 171parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
42 45parallel
Strand 3
B
19 22parallel
Strand 4
B
75 78parallel
Strand 5
B
101 104parallel
Strand 6
B
126 132parallel
Strand 7
B
141 150anti-parallel
Strand 8
B
166 173parallel
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