Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0G entry

There are 4 chains in PDB entry 9J0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 180
B
 ALA 2GLN 180
C
 ILE 4GLN 180
D
 ILE 4GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9J0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
99 107Right-handed alpha
Helix 5
AA5
A
124 129Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
140 146Right-handed alpha
Helix 8
AA8
A
146 152Right-handed alpha
Helix 9
AA9
A
166 179Right-handed alpha
Helix 10
AB1
B
17 26Right-handed alpha
Helix 11
AB2
B
93 98Right-handed alpha
Helix 12
AB3
B
98 107Right-handed alpha
Helix 13
AB4
B
118 122Right-handed 310
Helix 14
AB5
B
124 133Right-handed alpha
Helix 15
AB6
B
140 152Right-handed alpha
Helix 16
AB7
B
168 178Right-handed alpha
Helix 17
AB8
C
17 26Right-handed alpha
Helix 18
AB9
C
69 74Right-handed 310
Helix 19
AC1
C
89 98Right-handed alpha
Helix 20
AC2
C
98 107Right-handed alpha
Helix 21
AC3
C
118 123Right-handed 310
Helix 22
AC4
C
127 132Right-handed alpha
Helix 23
AC5
C
133 135Right-handed 310
Helix 24
AC6
C
141 152Right-handed alpha
Helix 25
AC7
C
166 179Right-handed alpha
Helix 26
AC8
D
17 28Right-handed alpha
Helix 27
AC9
D
69 74Right-handed alpha
Helix 28
AD1
D
101 105Right-handed 310
Helix 29
AD2
D
124 133Right-handed alpha
Helix 30
AD3
D
140 151Right-handed alpha
Helix 31
AD4
D
168 179Right-handed alpha
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There are 5 sheets in PDB entry 9J0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
4 12parallel
Strand 4
A
80 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
6 10parallel
Strand 4
B
77 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
54 56parallel
Strand 3
C
43 45anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 85first strand
Strand 2
C
113 117parallel
Strand 3
C
155 158parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 44first strand
Strand 2
D
54 58anti-parallel
Strand 3
D
5 9parallel
Strand 4
D
79 85parallel
Strand 5
D
112 117parallel
Strand 6
D
155 157parallel
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