Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J0H entry

There are 7 chains in PDB entry 9J0H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 11	GLY 417
B	THR 11	THR 415
C	THR 11	THR 415
D	THR 11	GLU 416
E	THR 11	GLU 416
F	THR 11	THR 415
G	THR 11	SER 413

There are118 helices in PDB entry 9J0H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	35	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	61	71	Right-handed alpha
Helix 4	AA4	A	78	80	Right-handed 310
Helix 5	AA5	A	111	126	Right-handed alpha
Helix 6	AA6	A	136	144	Right-handed alpha
Helix 7	AA7	A	226	234	Right-handed 310
Helix 8	AA8	A	239	255	Right-handed alpha
Helix 9	AA9	A	255	260	Right-handed alpha
Helix 10	AB1	A	301	303	Right-handed 310
Helix 11	AB2	A	308	312	Right-handed 310
Helix 12	AB3	A	313	332	Right-handed alpha
Helix 13	AB4	A	337	364	Right-handed alpha
Helix 14	AB5	A	367	379	Right-handed alpha
Helix 15	AB6	A	380	390	Right-handed alpha
Helix 16	AB7	A	393	402	Right-handed alpha
Helix 17	AB8	A	403	416	Right-handed alpha
Helix 18	AB9	B	21	35	Right-handed alpha
Helix 19	AC1	B	45	50	Right-handed alpha
Helix 20	AC2	B	61	71	Right-handed alpha
Helix 21	AC3	B	78	80	Right-handed 310
Helix 22	AC4	B	111	126	Right-handed alpha
Helix 23	AC5	B	136	144	Right-handed alpha
Helix 24	AC6	B	226	234	Right-handed 310
Helix 25	AC7	B	239	255	Right-handed alpha
Helix 26	AC8	B	255	260	Right-handed alpha
Helix 27	AC9	B	301	303	Right-handed 310
Helix 28	AD1	B	308	312	Right-handed 310
Helix 29	AD2	B	313	332	Right-handed alpha
Helix 30	AD3	B	337	364	Right-handed alpha
Helix 31	AD4	B	367	379	Right-handed alpha
Helix 32	AD5	B	380	390	Right-handed alpha
Helix 33	AD6	B	393	402	Right-handed alpha
Helix 34	AD7	B	403	414	Right-handed alpha
Helix 35	AD8	C	21	35	Right-handed alpha
Helix 36	AD9	C	45	50	Right-handed alpha
Helix 37	AE1	C	61	71	Right-handed alpha
Helix 38	AE2	C	78	80	Right-handed 310
Helix 39	AE3	C	111	126	Right-handed alpha
Helix 40	AE4	C	136	142	Right-handed alpha
Helix 41	AE5	C	226	234	Right-handed 310
Helix 42	AE6	C	239	255	Right-handed alpha
Helix 43	AE7	C	255	260	Right-handed alpha
Helix 44	AE8	C	301	303	Right-handed 310
Helix 45	AE9	C	308	312	Right-handed 310
Helix 46	AF1	C	313	332	Right-handed alpha
Helix 47	AF2	C	337	364	Right-handed alpha
Helix 48	AF3	C	367	379	Right-handed alpha
Helix 49	AF4	C	380	390	Right-handed alpha
Helix 50	AF5	C	393	402	Right-handed alpha
Helix 51	AF6	C	403	415	Right-handed alpha
Helix 52	AF7	D	21	35	Right-handed alpha
Helix 53	AF8	D	45	50	Right-handed alpha
Helix 54	AF9	D	61	71	Right-handed alpha
Helix 55	AG1	D	78	80	Right-handed 310
Helix 56	AG2	D	111	126	Right-handed alpha
Helix 57	AG3	D	136	144	Right-handed alpha
Helix 58	AG4	D	226	234	Right-handed 310
Helix 59	AG5	D	239	255	Right-handed alpha
Helix 60	AG6	D	255	260	Right-handed alpha
Helix 61	AG7	D	301	303	Right-handed 310
Helix 62	AG8	D	308	312	Right-handed 310
Helix 63	AG9	D	313	332	Right-handed alpha
Helix 64	AH1	D	337	364	Right-handed alpha
Helix 65	AH2	D	367	379	Right-handed alpha
Helix 66	AH3	D	380	390	Right-handed alpha
Helix 67	AH4	D	393	402	Right-handed alpha
Helix 68	AH5	D	403	415	Right-handed alpha
Helix 69	AH6	E	21	35	Right-handed alpha
Helix 70	AH7	E	45	50	Right-handed alpha
Helix 71	AH8	E	61	71	Right-handed alpha
Helix 72	AH9	E	78	80	Right-handed 310
Helix 73	AI1	E	111	126	Right-handed alpha
Helix 74	AI2	E	136	144	Right-handed alpha
Helix 75	AI3	E	226	234	Right-handed 310
Helix 76	AI4	E	239	255	Right-handed alpha
Helix 77	AI5	E	255	260	Right-handed alpha
Helix 78	AI6	E	301	303	Right-handed 310
Helix 79	AI7	E	308	312	Right-handed 310
Helix 80	AI8	E	313	332	Right-handed alpha
Helix 81	AI9	E	337	364	Right-handed alpha
Helix 82	AJ1	E	367	379	Right-handed alpha
Helix 83	AJ2	E	380	390	Right-handed alpha
Helix 84	AJ3	E	393	402	Right-handed alpha
Helix 85	AJ4	E	403	416	Right-handed alpha
Helix 86	AJ5	F	21	35	Right-handed alpha
Helix 87	AJ6	F	45	50	Right-handed alpha
Helix 88	AJ7	F	61	71	Right-handed alpha
Helix 89	AJ8	F	78	80	Right-handed 310
Helix 90	AJ9	F	111	126	Right-handed alpha
Helix 91	AK1	F	136	144	Right-handed alpha
Helix 92	AK2	F	226	234	Right-handed 310
Helix 93	AK3	F	239	255	Right-handed alpha
Helix 94	AK4	F	255	260	Right-handed alpha
Helix 95	AK5	F	308	312	Right-handed 310
Helix 96	AK6	F	313	332	Right-handed alpha
Helix 97	AK7	F	337	364	Right-handed alpha
Helix 98	AK8	F	367	379	Right-handed alpha
Helix 99	AK9	F	380	390	Right-handed alpha
Helix 100	AL1	F	393	403	Right-handed alpha
Helix 101	AL2	F	403	415	Right-handed alpha
Helix 102	AL3	G	21	35	Right-handed alpha
Helix 103	AL4	G	45	50	Right-handed alpha
Helix 104	AL5	G	61	71	Right-handed alpha
Helix 105	AL6	G	78	80	Right-handed 310
Helix 106	AL7	G	111	126	Right-handed alpha
Helix 107	AL8	G	136	144	Right-handed alpha
Helix 108	AL9	G	226	233	Right-handed 310
Helix 109	AM1	G	239	255	Right-handed alpha
Helix 110	AM2	G	255	260	Right-handed alpha
Helix 111	AM3	G	301	303	Right-handed 310
Helix 112	AM4	G	308	312	Right-handed 310
Helix 113	AM5	G	313	332	Right-handed alpha
Helix 114	AM6	G	337	364	Right-handed alpha
Helix 115	AM7	G	367	379	Right-handed alpha
Helix 116	AM8	G	380	390	Right-handed alpha
Helix 117	AM9	G	393	402	Right-handed alpha
Helix 118	AN1	G	403	413	Right-handed alpha

There are 28 sheets in PDB entry 9J0H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	38	42	parallel
Strand 3	A	15	18	parallel
Strand 4	A	146	149	parallel
Strand 5	A	296	299	parallel
Strand 6	A	288	290	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	108	first strand
Strand 2	A	82	90	anti-parallel
Strand 3	A	191	197	parallel
Strand 4	A	201	210	anti-parallel
Strand 5	A	213	222	anti-parallel
Strand 6	A	175	182	anti-parallel
Strand 7	A	268	269	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	108	first strand
Strand 2	A	82	90	anti-parallel
Strand 3	A	191	197	parallel
Strand 4	A	201	210	anti-parallel
Strand 5	A	213	222	anti-parallel
Strand 6	A	175	182	anti-parallel
Strand 7	A	275	279	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	305	306	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	38	42	parallel
Strand 3	B	15	18	parallel
Strand 4	B	146	149	parallel
Strand 5	B	296	299	parallel
Strand 6	B	288	290	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	108	first strand
Strand 2	B	82	90	anti-parallel
Strand 3	B	191	197	parallel
Strand 4	B	201	210	anti-parallel
Strand 5	B	213	222	anti-parallel
Strand 6	B	174	182	anti-parallel
Strand 7	B	268	269	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	108	first strand
Strand 2	B	82	90	anti-parallel
Strand 3	B	191	197	parallel
Strand 4	B	201	210	anti-parallel
Strand 5	B	213	222	anti-parallel
Strand 6	B	174	182	anti-parallel
Strand 7	B	275	280	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	305	306	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	38	42	parallel
Strand 3	C	15	18	parallel
Strand 4	C	146	149	parallel
Strand 5	C	296	299	parallel
Strand 6	C	288	290	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	108	first strand
Strand 2	C	82	90	anti-parallel
Strand 3	C	191	197	parallel
Strand 4	C	201	210	anti-parallel
Strand 5	C	213	222	anti-parallel
Strand 6	C	174	182	anti-parallel
Strand 7	C	268	269	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	108	first strand
Strand 2	C	82	90	anti-parallel
Strand 3	C	191	197	parallel
Strand 4	C	201	210	anti-parallel
Strand 5	C	213	222	anti-parallel
Strand 6	C	174	182	anti-parallel
Strand 7	C	275	280	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	305	306	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	38	42	parallel
Strand 3	D	15	18	parallel
Strand 4	D	146	149	parallel
Strand 5	D	296	299	parallel
Strand 6	D	288	290	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	108	first strand
Strand 2	D	82	90	anti-parallel
Strand 3	D	191	197	parallel
Strand 4	D	201	210	anti-parallel
Strand 5	D	213	222	anti-parallel
Strand 6	D	174	182	anti-parallel
Strand 7	D	268	269	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	108	first strand
Strand 2	D	82	90	anti-parallel
Strand 3	D	191	197	parallel
Strand 4	D	201	210	anti-parallel
Strand 5	D	213	222	anti-parallel
Strand 6	D	174	182	anti-parallel
Strand 7	D	275	280	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	305	306	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	132	first strand
Strand 2	E	38	42	parallel
Strand 3	E	15	18	parallel
Strand 4	E	146	149	parallel
Strand 5	E	296	299	parallel
Strand 6	E	288	290	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	108	first strand
Strand 2	E	82	90	anti-parallel
Strand 3	E	191	197	parallel
Strand 4	E	201	210	anti-parallel
Strand 5	E	213	222	anti-parallel
Strand 6	E	174	182	anti-parallel
Strand 7	E	268	269	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	108	first strand
Strand 2	E	82	90	anti-parallel
Strand 3	E	191	197	parallel
Strand 4	E	201	210	anti-parallel
Strand 5	E	213	222	anti-parallel
Strand 6	E	174	182	anti-parallel
Strand 7	E	275	280	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	284	first strand
Strand 2	E	305	306	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	132	first strand
Strand 2	F	38	42	parallel
Strand 3	F	15	18	parallel
Strand 4	F	146	149	parallel
Strand 5	F	296	299	parallel
Strand 6	F	288	290	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	108	first strand
Strand 2	F	82	90	anti-parallel
Strand 3	F	191	197	parallel
Strand 4	F	201	210	anti-parallel
Strand 5	F	213	222	anti-parallel
Strand 6	F	174	182	anti-parallel
Strand 7	F	268	269	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	108	first strand
Strand 2	F	82	90	anti-parallel
Strand 3	F	191	197	parallel
Strand 4	F	201	210	anti-parallel
Strand 5	F	213	222	anti-parallel
Strand 6	F	174	182	anti-parallel
Strand 7	F	275	280	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	284	first strand
Strand 2	F	305	306	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	132	first strand
Strand 2	G	38	42	parallel
Strand 3	G	15	18	parallel
Strand 4	G	146	149	parallel
Strand 5	G	296	299	parallel
Strand 6	G	288	290	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	108	first strand
Strand 2	G	82	90	anti-parallel
Strand 3	G	191	197	parallel
Strand 4	G	201	210	anti-parallel
Strand 5	G	213	222	anti-parallel
Strand 6	G	175	182	anti-parallel
Strand 7	G	268	269	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	108	first strand
Strand 2	G	82	90	anti-parallel
Strand 3	G	191	197	parallel
Strand 4	G	201	210	anti-parallel
Strand 5	G	213	222	anti-parallel
Strand 6	G	175	182	anti-parallel
Strand 7	G	275	279	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	284	first strand
Strand 2	G	305	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J0H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0H