Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0J entry

There is 1 chain in PDB entry 9J0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 18THR 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9J0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 45Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
96 101Right-handed alpha
Helix 4
AA4
A
102 104Right-handed 310
Helix 5
AA5
A
121 126Right-handed 310
Helix 6
AA6
A
132 138Right-handed alpha
Helix 7
AA7
A
138 153Right-handed alpha
Helix 8
AA8
A
166 176Right-handed alpha
Helix 9
AA9
A
247 258Right-handed alpha
Helix 10
AB1
A
258 268Right-handed alpha
Helix 11
AB2
A
277 280Right-handed 310
Helix 12
AB3
A
304 306Right-handed 310
Helix 13
AB4
A
314 316Right-handed 310
Helix 14
AB5
A
317 333Right-handed alpha
Helix 15
AB6
A
378 392Right-handed alpha
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There are 7 sheets in PDB entry 9J0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
34 37anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
58 59anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
92 95anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
154 158parallel
Strand 3
A
348 352anti-parallel
Strand 4
A
222 229anti-parallel
Strand 5
A
371 377anti-parallel
Strand 6
A
187 190anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
356 359anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 287first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
308 309anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
298 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il